RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 SHOC2Q9UQ13 582 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 UBOX5O94941 541 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 CDH4P55283 916 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 TAF5Q15542 800 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 HKDC1Q2TB90 917 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 LMBRD2Q68DH5 695 aaPredicted RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 PRR23BQ6ZRT6 265 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 PHF10Q8WUB8 498 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 PDLIM2Q96JY6 352 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 MCCC1Q96RQ3 725 aaPredicted RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 SLC9A8Q9Y2E8 581 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 ZNF37AP17032 561 aaPredicted RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 TOB2Q14106 344 aaPredicted RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 RAB11FIP2Q7L804 512 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 SUN5Q8TC36 379 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 GTF3C2Q8WUA4 911 aaPredicted RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 NUDT12Q9BQG2 462 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 DDIT4Q9NX09 232 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 OGNP20774 298 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 OCLNQ16625 522 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 C11orf63Q6NUN7 778 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 REEP2Q9BRK0 252 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 TRMT13Q9NUP7 481 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 TMEM51Q9NW97 253 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 PTPRTO14522 1441 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 PDHBP11177 359 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 MCAMP43121 646 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 S100A12P80511 92 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 SMIM5Q71RC9 77 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 UBE2E3Q969T4 207 aa11.85□□□□□ -0.51
VPS13A-205ENST00000376636 PUS3Q9BZE2 481 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 DDX20Q9UHI6 824 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 UBQLN1Q9UMX0 589 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 MRPS7Q9Y2R9 242 aaKnown RBP11.85□□□□□ -0.51
VPS13A-205ENST00000376636 CDC42BPBQ9Y5S2 1711 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ERI2A8K979 691 aaKnown RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 TUBA3EQ6PEY2 450 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 TAS2R13Q9NYV9 303 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 GRIP1Q9Y3R0 1128 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 N6AMT1Q9Y5N5 214 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ZNF806P0C7X5 589 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 TNK2Q07912 1038 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 HECTD3Q5T447 861 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 PLA2G4CQ9UP65 541 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 CDHR2Q9BYE9 1310 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 TTLL13PA6NNM8 815 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 PAX7P23759 505 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 NAB1Q13506 487 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 SPIDRQ14159 915 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 FAM196AQ6ZSG2 479 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 BSNDQ8WZ55 320 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 STRBPQ96SI9 672 aaKnown RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ATP4AP20648 1035 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ARL3P36405 182 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 LRRC69Q6ZNQ3 347 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 PIK3R3Q92569 461 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 AKAP1Q92667 903 aaKnown RBP eCLIP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 PSME2Q9UL46 239 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 GATBO75879 557 aaKnown RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 MTA2O94776 668 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 RAET1EQ8TD07 263 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 GTF3C4Q9UKN8 822 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 AP4E1Q9UPM8 1137 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 PLCL2Q9UPR0 1127 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 A0A087X1B8 175 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 PECAM1P16284 738 aaPredicted RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 PDX1P52945 283 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 MYBPC1Q00872 1141 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ACTRT1Q8TDG2 376 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 PTGFRNQ9P2B2 879 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 UPB1Q9UBR1 384 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ULK1O75385 1050 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 FBXO21O94952 628 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 RLN1P04808 185 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 PTGS2P35354 604 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ACTR3P61158 418 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 KYAT3Q6YP21 454 aaKnown RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ZNF540Q8NDQ6 660 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ATXN2LQ8WWM7 1075 aaKnown RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ZNF214Q9UL59 606 aaPredicted RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 MROH7-TTC4A0A0A0MT08 1334 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 M0QYT0 321 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 PSMD11O00231 422 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 TBX3O15119 743 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 CCNT2O60583 730 aaKnown RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ATF4P18848 351 aaPredicted RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 EMC2Q15006 297 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 NRF1Q16656 503 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ZNF248Q8NDW4 579 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 C17orf75Q9HAS0 396 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 SPAG4Q9NPE6 437 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 TPD52L2O43399 206 aaKnown RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 THRBP10828 461 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 SKA1Q96BD8 255 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 AHCYL2Q96HN2 611 aaKnown RBP11.84□□□□□ -0.51
VPS13A-205ENST00000376636 APOPT1Q96IL0 206 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 FAM118BQ9BPY3 351 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 ZNF221Q9UK13 617 aa11.84□□□□□ -0.51
VPS13A-205ENST00000376636 AP1G2O75843 785 aa11.83□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms