RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 DNPEPQ9ULA0 475 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 MAFFQ9ULX9 164 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 STARD13Q9Y3M8 1113 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 RWDD3Q9Y3V2 267 aa13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 TNRC18O15417 2968 aaPredicted RBP13.54□□□□□ -0.24
SQSTM1-201ENST00000360718 H3BRJ5 948 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 PRRG1O14668 218 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 APOL1O14791 398 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 PRPF4O43172 522 aaKnown RBP eCLIP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 IGLV3-25P01717 112 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 TAC1P20366 129 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 ADRA1BP35368 520 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 CXCR3P49682 368 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 GPS1Q13098 491 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 EIF4EBP2Q13542 120 aaPredicted RBP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 SETDB1Q15047 1291 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 RASA2Q15283 850 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 E2F5Q15329 346 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 ZKSCAN8Q15776 578 aaPredicted RBP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 TRABD2AQ86V40 505 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 CASP10Q92851 521 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 SERPINB11Q96P15 392 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 SMC6Q96SB8 1091 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 KCTD15Q96SI1 283 aaPredicted RBP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 PAIP2Q9BPZ3 127 aaKnown RBP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 CXorf56Q9H5V9 222 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 PRDM16Q9HAZ2 1276 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 ARHGEF3Q9NR81 526 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 OLA1Q9NTK5 396 aaKnown RBP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 CLIC5Q9NZA1 410 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 SFMBT1Q9UHJ3 866 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 GGT7Q9UJ14 662 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 MAGED2Q9UNF1 606 aaPredicted RBP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 ANAPC1Q9H1A4 1944 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 HIDE1A8MVS5 230 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 MCF2LO15068 1137 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 ALOX15BO15296 676 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 MSI1O43347 362 aaKnown RBP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 KRT15P19012 456 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 TGM2P21980 687 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 VCPP55072 806 aaKnown RBP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 OTUD4Q01804 1114 aaKnown RBP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 SCAPQ12770 1279 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 CAMK1Q14012 370 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 VEPH1Q14D04 833 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 TMC7Q7Z402 723 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 ACTL9Q8TC94 416 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 SPPL3Q8TCT6 385 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 RAB3IPQ96QF0 476 aaPredicted RBP13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 TXLNGQ9NUQ3 528 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 SLC24A2Q9UI40 661 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 SHOC2Q9UQ13 582 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 YIPF1Q9Y548 306 aa13.53□□□□□ -0.24
SQSTM1-201ENST00000360718 POC1B-GALNT4F8VUJ3 575 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 CXCL14O95715 111 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 TBX18O95935 607 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 ITGAVP06756 1048 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 CA3P07451 260 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 CSH1P0DML2 217 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 CSH2P0DML3 217 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 ALADP13716 330 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 HMGA1P17096 107 aaKnown RBP13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 ALDH3A1P30838 453 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 ZNF135P52742 658 aaPredicted RBP13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 BRMS1LQ5PSV4 323 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 RGS9BPQ6ZS82 235 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 FITM2Q8N6M3 262 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 PDZD8Q8NEN9 1154 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 NKD2Q969F2 451 aaPredicted RBP13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 FAF2Q96CS3 445 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 TCF25Q9BQ70 676 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 TKTL2Q9H0I9 626 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 TRABDQ9H4I3 376 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 VPS37BQ9H9H4 285 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 NUP205Q92621 2012 aa13.52□□□□□ -0.24
SQSTM1-201ENST00000360718 DENND4CQ5VZ89 1909 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 FOXO6A8MYZ6 492 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 IRAK2O43187 625 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 CREB3O43889 395 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 ASMTLO95671 621 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 PECAM1P16284 738 aaPredicted RBP13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 CCND1P24385 295 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 CCR1P32246 355 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 PHBP35232 272 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 PBX2P40425 430 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 KCNJ2P63252 427 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 MSANTD2Q6P1R3 559 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 PQLC3Q8N755 202 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 PCDH19Q8TAB3 1148 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 POF1BQ8WVV4 589 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 TBC1D31Q96DN5 1066 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 CSPG4P5Q96PW8 444 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 TTLL2Q9BWV7 592 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 UBE2OQ9C0C9 1292 aaKnown RBP13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 PHACTR1Q9C0D0 580 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 PCDH9Q9HC56 1237 aa13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 YBX2Q9Y2T7 364 aaKnown RBP13.52□□□□□ -0.25
SQSTM1-201ENST00000360718 SNX10Q9Y5X0 201 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms