RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 NUMBP49757 651 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 SNX17Q15036 470 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 ZIK1Q3SY52 487 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 ST13P5Q8NFI4 369 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 ENKURQ8TC29 256 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 GMCL1Q96IK5 515 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 FHDC1Q9C0D6 1143 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 RAD21L1Q9H4I0 556 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 DENND2DQ9H6A0 471 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 ERVK-5Q9HDB9 667 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 SCAF8Q9UPN6 1271 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 C3P01024 1663 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 CYP2C9P11712 490 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 NECAB2Q7Z6G3 386 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 B3GALNT2Q8NCR0 500 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 CELF6Q96J87 481 aaKnown RBP19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 CINPQ9BW66 212 aaPredicted RBP19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 CDH3P22223 829 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 MAMLD1Q13495 774 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 ARHGEF7Q14155 803 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 SPPL2AQ8TCT8 520 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 PNPLA3Q9NST1 481 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 TMEM150BA6NC51 233 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 JAK1P23458 1154 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 MAPK1P28482 360 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 C10orf120Q5SQS8 335 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 ANKS6Q68DC2 871 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 MFSD5Q6N075 450 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 ILDR2Q71H61 639 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 CDH24Q86UP0 819 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 ETNK2Q9NVF9 386 aa19.91■□□□□ 0.78
CCDC88B-202ENST00000356786 TNFRSF21O75509 655 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 LYNP07948 512 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 CXCL8P10145 99 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 RNFT2Q96EX2 444 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 NMUR2Q9GZQ4 415 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 NUAK2Q9H093 628 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 SELENONQ9NZV5 590 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 SLC17A7Q9P2U7 560 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 TMCO1Q9UM00 188 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 DUSP12Q9UNI6 340 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 EIF4BP23588 611 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 NR2C2P49116 596 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 SFSWAPQ12872 951 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 ABRAXAS1Q6UWZ7 409 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 FBXO39Q8N4B4 442 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 RBM46Q8TBY0 533 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 POMKQ9H5K3 350 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 ACTR8Q9H981 624 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 TNS2Q63HR2 1409 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 CHADO15335 359 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 MLNP12872 115 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 LSM3P62310 102 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 CRADDP78560 199 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 CDC16Q13042 620 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 TTC23Q5W5X9 447 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 FAM228AQ86W67 206 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 FAM71AQ8IYT1 594 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 PQLC1Q8N2U9 271 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 RAB42Q8N4Z0 105 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 MECRQ9BV79 373 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 ABCB10Q9NRK6 738 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 DMTF1Q9Y222 760 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 ANKRD6Q9Y2G4 727 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 ALOX15BO15296 676 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 RAD51BO15315 384 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 CDH8P55286 799 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 ALDH6A1Q02252 535 aaKnown RBP19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 DGKKQ5KSL6 1271 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 BROXQ5VW32 411 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 MYO1HQ8N1T3 1032 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 NT5MQ9NPB1 228 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 NMRK2Q9NPI5 230 aa19.9■□□□□ 0.78
CCDC88B-202ENST00000356786 FAM25AB3EWG3 89 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 FAM25CB3EWG5 89 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 FAM25GB3EWG6 89 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 TADA2AO75478 443 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 LCA5LO95447 670 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 NPY2RP49146 381 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 HPCAP84074 193 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 NAB1Q13506 487 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 ZNF554Q86TJ5 538 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 SEPT5Q99719 369 aaPredicted RBP19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 SLC4A5Q9BY07 1137 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 ELOVL6Q9H5J4 265 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 RMI1Q9H9A7 625 aa19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 AGO4Q9HCK5 861 aaKnown RBP19.89■□□□□ 0.78
CCDC88B-202ENST00000356786 LOC100506127A0A0U1RQW1 187 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 CAPN8A6NHC0 703 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 SEC24AO95486 1093 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 SLC2A3P11169 496 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 FBXW4P57775 412 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 XIAPP98170 497 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 UTS2BQ765I0 119 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 POC5Q8NA72 575 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 SPRTNQ9H040 489 aaPredicted RBP19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 SNPHO15079 494 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 MIB1Q86YT6 1006 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 SCUBE3Q8IX30 993 aa19.89■□□□□ 0.77
CCDC88B-202ENST00000356786 BPIFB6Q8NFQ5 453 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms