RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 RCOR2Q8IZ40 523 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 RYBPQ8N488 228 aaPredicted RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 OR52K2Q8NGK3 314 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 HDAC7Q8WUI4 952 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 SMARCD2Q92925 531 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 ZFRQ96KR1 1074 aaKnown RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 VPS28Q9UK41 221 aa9.48□□□□□ -0.89
USP4-202ENST00000351842 MTCL1Q9Y4B5 1905 aaKnown RBP9.48□□□□□ -0.89
USP4-202ENST00000351842 hCG_1818297A0A087WSY0 165 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 SNAP91O60641 907 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 TJP3O95049 919 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 RBP3P10745 1247 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 IL4RP24394 825 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 EIF3EP60228 445 aaKnown RBP9.47□□□□□ -0.89
USP4-202ENST00000351842 PRSS36Q5K4E3 855 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 ADGRF1Q5T601 910 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 CCDC117Q8IWD4 279 aaPredicted RBP9.47□□□□□ -0.89
USP4-202ENST00000351842 KATNAL2Q8IYT4 538 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 NIPA2Q8N8Q9 360 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 EXD1Q8NHP7 514 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 IFT81Q8WYA0 676 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 CENPIQ92674 756 aaPredicted RBP9.47□□□□□ -0.89
USP4-202ENST00000351842 NT5C3BQ969T7 300 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 PRICKLE1Q96MT3 831 aaPredicted RBP9.47□□□□□ -0.89
USP4-202ENST00000351842 RNF157Q96PX1 679 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 CDCA3Q99618 268 aaPredicted RBP9.47□□□□□ -0.89
USP4-202ENST00000351842 CDH7Q9ULB5 785 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 MRFAP1Q9Y605 127 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 ANAPC1Q9H1A4 1944 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 GOLGA6L10A0A0M3HER8 536 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 CCDC78A2IDD5 438 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 C2CD4DB7Z1M9 353 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 KCNN4O15554 427 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 SLU7O95391 586 aaKnown RBP9.47□□□□□ -0.89
USP4-202ENST00000351842 SLC2A3P11169 496 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 LAMP2P13473 410 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 MLLT6P55198 1093 aaPredicted RBP9.47□□□□□ -0.89
USP4-202ENST00000351842 CBX1P83916 185 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 AMPD2Q01433 879 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 SLC10A2Q12908 348 aaPredicted RBP9.47□□□□□ -0.89
USP4-202ENST00000351842 TRADDQ15628 312 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 ERCC6LQ2NKX8 1250 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 IER5LQ5T953 404 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 DDX42Q86XP3 938 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP4-202ENST00000351842 PQLC3Q8N755 202 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 GLIS1Q8NBF1 620 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 SMRP1Q8NCR6 262 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 SPATA4Q8NEY3 305 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 BPIFB1Q8TDL5 484 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 PDCD6IPQ8WUM4 868 aaKnown RBP9.47□□□□□ -0.89
USP4-202ENST00000351842 TBC1D31Q96DN5 1066 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 ASB16Q96NS5 453 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 TM6SF2Q9BZW4 377 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 CARD9Q9H257 536 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 MTG2Q9H4K7 406 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 ABCB8Q9NUT2 735 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 DDX56Q9NY93 547 aaKnown RBP9.47□□□□□ -0.89
USP4-202ENST00000351842 ASIC3Q9UHC3 531 aa9.47□□□□□ -0.89
USP4-202ENST00000351842 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 TTI1O43156 1089 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 MZF1P28698 734 aaPredicted RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 SEC13P55735 322 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 ZNF177Q13360 481 aaPredicted RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 KCNC3Q14003 757 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 RNF219Q5W0B1 726 aaPredicted RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 PAPD7Q5XG87 772 aaKnown RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 CYB5D2Q8WUJ1 264 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 FNDC3AQ9Y2H6 1198 aaKnown RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 COL4A4P53420 1690 aaPredicted RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 MCF2LO15068 1137 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 NARSO43776 548 aaKnown RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 GJB3O75712 270 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 CYBBP04839 570 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 RHOCP08134 193 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 TYRP14679 529 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 HOXB8P17481 243 aaPredicted RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 KPNA1P52294 538 aaPredicted RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 HADHBP55084 474 aaKnown RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 ITIH3Q06033 890 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 GABPB1Q06547 395 aaPredicted RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 CCDC137Q6PK04 289 aaKnown RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 ZNF662Q6ZS27 426 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 PLD5Q8N7P1 536 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 FLCNQ8NFG4 579 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 CMASQ8NFW8 434 aaPredicted RBP9.46□□□□□ -0.89
USP4-202ENST00000351842 CCDC110Q8TBZ0 833 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 HMCESQ96FZ2 354 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 SLC39A13Q96H72 371 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 APOL2Q9BQE5 337 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 ZYG11BQ9C0D3 744 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 RRN3Q9NYV6 651 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 HSFX1Q9UBD0 423 aa9.46□□□□□ -0.89
USP4-202ENST00000351842 PTPRZ1P23471 2315 aaPredicted RBP9.46□□□□□ -0.9
USP4-202ENST00000351842 NUMA1Q14980 2115 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 A0A1W2PPC1 479 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 J3KR12 359 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 RBL1P28749 1068 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 MAN1A1P33908 653 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 GDF10P55107 478 aa9.46□□□□□ -0.9
USP4-202ENST00000351842 GSCP56915 257 aaPredicted RBP9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms