RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 AP1G1O43747 822 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 HARS2P49590 506 aaKnown RBP22.92■■□□□ 1.26
TRIM28-202ENST00000341753 CLCN3P51790 818 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 HDAC4P56524 1084 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 IGBP1P78318 339 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 FLOT2Q14254 428 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 DLG2Q15700 870 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 PMF1Q6P1K2 205 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 METTL7BQ6UX53 244 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 LILRA2Q8N149 483 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 MARK4Q96L34 752 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 PDGFCQ9NRA1 345 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 FAM49BQ9NUQ9 324 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 SYBUQ9NX95 663 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 TXNDC16Q9P2K2 825 aa22.92■■□□□ 1.26
TRIM28-202ENST00000341753 NOP56O00567 594 aaKnown RBP22.91■■□□□ 1.26
TRIM28-202ENST00000341753 SOCS7O14512 581 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 DENRO43583 198 aaKnown RBP22.91■■□□□ 1.26
TRIM28-202ENST00000341753 PFDN1O60925 122 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 CNMDO75829 334 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 TMCC1O94876 653 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 PFKMP08237 780 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 ALOX15P16050 662 aaPredicted RBP22.91■■□□□ 1.26
TRIM28-202ENST00000341753 TCN1P20061 433 aaPredicted RBP22.91■■□□□ 1.26
TRIM28-202ENST00000341753 PGGT1BP53609 377 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 IRF9Q00978 393 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 FAM160B1Q5W0V3 765 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 EPGNQ6UW88 154 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 ACMSDQ8TDX5 336 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 SGIP1Q9BQI5 828 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 RTKNQ9BST9 563 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 CDH19Q9H159 772 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 EPB41L1Q9H4G0 881 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 MTMR10Q9NXD2 777 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 NDUFA13Q9P0J0 144 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 MGAMO43451 1857 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 PDK1Q15118 436 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 GOLGA7BQ2TAP0 167 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 FSCBQ5H9T9 825 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 STXBP5Q5T5C0 1151 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 GPC2Q8N158 579 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 ARNTL2Q8WYA1 636 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 GPR20Q99678 358 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 SNX15Q9NRS6 342 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 DNAAF2Q9NVR5 837 aaKnown RBP22.91■■□□□ 1.26
TRIM28-202ENST00000341753 SEPT10Q9P0V9 454 aa22.91■■□□□ 1.26
TRIM28-202ENST00000341753 GNEQ9Y223 722 aaKnown RBP22.91■■□□□ 1.26
TRIM28-202ENST00000341753 CHRNGP07510 517 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 VDRP11473 427 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 MS4A2Q01362 244 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 SEMA5AQ13591 1074 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 PYROXD2Q8N2H3 581 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 MRPL1Q9BYD6 325 aaKnown RBP22.9■■□□□ 1.26
TRIM28-202ENST00000341753 CDT1Q9H211 546 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 MINDY3Q9H8M7 445 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 C6orf203Q9P0P8 240 aaPredicted RBP22.9■■□□□ 1.26
TRIM28-202ENST00000341753 HES2Q9Y543 173 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 MCM3APO60318 1980 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 ALDH1A2O94788 518 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 MYL4P12829 197 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 ENO3P13929 434 aaPredicted RBP22.9■■□□□ 1.26
TRIM28-202ENST00000341753 NELFEP18615 380 aaKnown RBP22.9■■□□□ 1.26
TRIM28-202ENST00000341753 PIK3R1P27986 724 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 EPHA3P29320 983 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 HPCAP84074 193 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 RARS2Q5T160 578 aaKnown RBP22.9■■□□□ 1.26
TRIM28-202ENST00000341753 AMIGO2Q86SJ2 522 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 TDRD5Q8NAT2 981 aaKnown RBP22.9■■□□□ 1.26
TRIM28-202ENST00000341753 FAM156AQ8NDB6 213 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 BHLHE22Q8NFJ8 381 aaPredicted RBP22.9■■□□□ 1.26
TRIM28-202ENST00000341753 CEP70Q8NHQ1 597 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 LPIN3Q9BQK8 851 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 GBA2Q9HCG7 927 aaPredicted RBP22.9■■□□□ 1.26
TRIM28-202ENST00000341753 STK39Q9UEW8 545 aa22.9■■□□□ 1.26
TRIM28-202ENST00000341753 LTFP02788 710 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 MX2P20592 715 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 MPSTP25325 297 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 DBN1Q16643 649 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 STEAP4Q687X5 459 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 DSELQ8IZU8 1212 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 DCLK2Q8N568 766 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 COLGALT1Q8NBJ5 622 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 CLEC4CQ8WTT0 213 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 SPATA33Q96N06 139 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 PKP2Q99959 881 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 ZNF670Q9BS34 389 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 RBM38Q9H0Z9 239 aaKnown RBP22.89■■□□□ 1.26
TRIM28-202ENST00000341753 TCF7L2Q9NQB0 619 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 PCDHB12Q9Y5F1 795 aa22.89■■□□□ 1.26
TRIM28-202ENST00000341753 GPR25O00155 361 aa22.89■■□□□ 1.25
TRIM28-202ENST00000341753 IQCF3P0C7M6 154 aa22.89■■□□□ 1.25
TRIM28-202ENST00000341753 ADGRE1Q14246 886 aa22.89■■□□□ 1.25
TRIM28-202ENST00000341753 TMEM198Q66K66 360 aa22.89■■□□□ 1.25
TRIM28-202ENST00000341753 OLFML1Q6UWY5 402 aa22.89■■□□□ 1.25
TRIM28-202ENST00000341753 RCN3Q96D15 328 aa22.89■■□□□ 1.25
TRIM28-202ENST00000341753 GCOM2Q9BZD3 368 aaPredicted RBP22.89■■□□□ 1.25
TRIM28-202ENST00000341753 SENP6Q9GZR1 1112 aaPredicted RBP22.89■■□□□ 1.25
TRIM28-202ENST00000341753 Q9H521 79 aa22.89■■□□□ 1.25
TRIM28-202ENST00000341753 DTLQ9NZJ0 730 aa22.89■■□□□ 1.25
TRIM28-202ENST00000341753 HEMK1Q9Y5R4 338 aaPredicted RBP22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms