RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CPEB1Q9BZB8 566 aaKnown RBP8.61□□□□□ -1.03
HMGB1-203ENST00000341423 BRD8Q9H0E9 1235 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 HEBP1Q9NRV9 189 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 MTMR10Q9NXD2 777 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 MAFFQ9ULX9 164 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 SCML1Q9UN30 329 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 HEBP2Q9Y5Z4 205 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 ARL5CA6NH57 179 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 PP2D1A8MPX8 630 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 TJP3O95049 919 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 GJA1P17302 382 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 ME2P23368 584 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 MLLT3P42568 568 aaPredicted RBP8.61□□□□□ -1.03
HMGB1-203ENST00000341423 GEMP55040 296 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 PTENP60484 403 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 P3H1Q32P28 736 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 CCDC62Q6P9F0 684 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 OR2W6PQ8NHA6 318 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 OTUD7AQ8TE49 926 aaPredicted RBP8.61□□□□□ -1.03
HMGB1-203ENST00000341423 NUF2Q9BZD4 464 aa8.61□□□□□ -1.03
HMGB1-203ENST00000341423 PRR33A8MZF0 331 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 H3BNH8 94 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 ZNF202O95125 648 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 RETP07949 1114 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 JUNDP17535 347 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 GRM5P41594 1212 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 NUMBP49757 651 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 BOP1Q14137 746 aaKnown RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 RCAN2Q14206 197 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 PTPN21Q16825 1174 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 SLC9A4Q6AI14 798 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 KLHL6Q8WZ60 621 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 TMEM237Q96Q45 408 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 PLEKHF1Q96S99 279 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 TMX1Q9H3N1 280 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 TXNRD2Q9NNW7 524 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 NUDT5Q9UKK9 219 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 KIDINS220Q9ULH0 1771 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 GON4LQ3T8J9 2241 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CTAGE15A4D2H0 777 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 POLR1CO15160 346 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 KIAA0754O94854 1291 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CTAGE8P0CG41 777 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CTNNA1P35221 906 aaKnown RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CCR4P51679 360 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 MRNIPQ6NTE8 343 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CTAGE6Q86UF2 777 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CTAGE4Q8IX94 777 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 FSTL5Q8N475 847 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 IGSF22Q8N9C0 903 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 ST13P5Q8NFI4 369 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 HEXDCQ8WVB3 486 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 LCN9Q8WX39 176 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 FAF2Q96CS3 445 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 TTLL2Q9BWV7 592 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 LHX6Q9UPM6 363 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 HCFC2Q9Y5Z7 792 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 KNTC1P50748 2209 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CROCC2H7BZ55 1655 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CAPN5O15484 640 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CDC40O60508 579 aaKnown RBP eCLIP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 PEX10O60683 326 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 SLC25A14O95258 325 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 ZNF853P0CG23 659 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 PABPC1P11940 636 aaKnown RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 MPLP40238 635 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 TNFSF9P41273 254 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 TOB1P50616 345 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 DEFB103AP81534 67 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 C3orf38Q5JPI3 329 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 TRIM65Q6PJ69 517 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 C14orf80Q86SX3 495 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 MAP4K1Q92918 833 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 ELMO2Q96JJ3 720 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 IRX2Q9BZI1 471 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 WNT16Q9UBV4 365 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 TRAF3IP3Q9Y228 551 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 A6NL46 340 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 LACTBL1A8MY62 500 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 PER1O15534 1290 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 LILRB3O75022 631 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CLDN11O75508 207 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 URI1O94763 535 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 ATF2P15336 505 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 ABL2P42684 1182 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 ZNF33AQ06730 810 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CCDC60Q8IWA6 550 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 HOMEZQ8IX15 550 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 SYNPOQ8N3V7 929 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 RSPH9Q9H1X1 276 aaPredicted RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 CAAP1Q9H8G2 361 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 PARVAQ9NVD7 372 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 EIF2B4Q9UI10 523 aaKnown RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 MRPL42Q9Y6G3 142 aaKnown RBP8.6□□□□□ -1.03
HMGB1-203ENST00000341423 TMEM150CB9EJG8 249 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 JAK2O60674 1132 aa8.6□□□□□ -1.03
HMGB1-203ENST00000341423 F11P03951 625 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms