RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TMEM237Q96Q45 408 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 GAKO14976 1311 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 IGSF6O95976 241 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 TSPAN19P0C672 248 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 ELK3P41970 407 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 CRATP43155 626 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 SRP54P61011 504 aaKnown RBP12.86□□□□□ -0.35
SDC3-201ENST00000336798 SYT12Q8IV01 421 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 FRMD8Q9BZ67 464 aaPredicted RBP12.86□□□□□ -0.35
SDC3-201ENST00000336798 ZNHIT2Q9UHR6 403 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 DDTLA6NHG4 134 aaPredicted RBP12.86□□□□□ -0.35
SDC3-201ENST00000336798 SPIDRQ14159 915 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 LRRN4Q8WUT4 740 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 POLR1BQ9H9Y6 1135 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 TOR4AQ9NXH8 423 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 NDUFAF1Q9Y375 327 aa12.86□□□□□ -0.35
SDC3-201ENST00000336798 ADM5C9JUS6 153 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 AMHP03971 560 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 MPOP05164 745 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 ACADSP16219 412 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 POLD2P49005 469 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 DENND6AQ8IWF6 608 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 ERGIC2Q96RQ1 377 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 MTG1Q9BT17 334 aaPredicted RBP12.85□□□□□ -0.35
SDC3-201ENST00000336798 HGH1Q9BTY7 390 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 XPNPEP3Q9NQH7 507 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 LACTBL1A8MY62 500 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 FAM86B1E9PN63 330 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 ATP9AO75110 1047 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 YBX3P16989 372 aaKnown RBP eCLIP12.85□□□□□ -0.35
SDC3-201ENST00000336798 SCTRP47872 440 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 MAPKAPK2P49137 400 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 HERVK_113P62684 666 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 MGAT5Q09328 741 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 SLC15A2Q16348 729 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 SPATA31A1Q5TZJ5 1347 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 RTL3Q8N8U3 475 aaKnown RBP12.85□□□□□ -0.35
SDC3-201ENST00000336798 SLC5A5Q92911 643 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 NSMCE2Q96MF7 247 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 ARMCX1Q9P291 453 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 KIAA1257Q9ULG3 409 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 STON1Q9Y6Q2 735 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 F8VZ95 297 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 MYL12BO14950 172 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 NTRK1P04629 796 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 COX7A2P14406 83 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 ZNF7P17097 686 aaPredicted RBP12.85□□□□□ -0.35
SDC3-201ENST00000336798 STK32CQ86UX6 486 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 PROSER1Q86XN7 944 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 ZNF671Q8TAW3 534 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 TKTL2Q9H0I9 626 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 TMBIM4Q9HC24 238 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 TCF7L2Q9NQB0 619 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 COG5Q9UP83 839 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 MYL12AP19105 171 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 CALB2P22676 271 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 PIK3R1P27986 724 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 SNAP47Q5SQN1 464 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 RETSATQ6NUM9 610 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 CDH24Q86UP0 819 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 PARGQ86W56 976 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 CCNJLQ8IV13 435 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 ACTL9Q8TC94 416 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 FBXO25Q8TCJ0 367 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 SLC4A5Q9BY07 1137 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 LCA5LO95447 670 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 CLPTM1O96005 669 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 EPORP19235 508 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 FASP25445 335 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 THOP1P52888 689 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 PFKPQ01813 784 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 C16orf46Q6P387 395 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 SCAIQ8N9R8 606 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 MCOLN3Q8TDD5 553 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 NOL6Q9H6R4 1146 aaKnown RBP12.85□□□□□ -0.35
SDC3-201ENST00000336798 CDHR5Q9HBB8 845 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 ARL15Q9NXU5 204 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 ENTPD4Q9Y227 616 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 SHROOM2Q13796 1616 aa12.85□□□□□ -0.35
SDC3-201ENST00000336798 PIK3CDO00329 1044 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 AKAP3O75969 853 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 PROSCO94903 275 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 SSTR1P30872 391 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 RENBPP51606 427 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 RHAGQ02094 409 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 PGM5Q15124 567 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 FAM124AQ86V42 546 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 FAM126BQ8IXS8 530 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 DEFB106AQ8N104 65 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 DKK3Q9UBP4 350 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 ITGA11Q9UKX5 1188 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 BMP10O95393 424 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 IL1R1P14778 569 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 GPR1P46091 355 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 CRADDP78560 199 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 SMARCD1Q96GM5 515 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 DGCR6LQ9BY27 220 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 SPATC1LQ9H0A9 340 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 VPS51Q9UID3 782 aa12.84□□□□□ -0.35
SDC3-201ENST00000336798 CRY1Q16526 586 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms