RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 NDUFAF2Q8N183 169 aa17.84■□□□□ 0.45
DDX28-201ENST00000332395 PCSK9Q8NBP7 692 aaKnown RBP17.84■□□□□ 0.45
DDX28-201ENST00000332395 SCAMP5Q8TAC9 235 aa17.84■□□□□ 0.45
DDX28-201ENST00000332395 RNF34Q969K3 372 aa17.84■□□□□ 0.45
DDX28-201ENST00000332395 SUSD3Q96L08 255 aa17.84■□□□□ 0.45
DDX28-201ENST00000332395 KANSL3Q9P2N6 904 aa17.84■□□□□ 0.45
DDX28-201ENST00000332395 PTPRDP23468 1912 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 MTSS1O43312 755 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 AP2A1O95782 977 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 IL1BP01584 269 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 CRHR1P34998 444 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 GARSP41250 739 aaKnown RBP17.83■□□□□ 0.45
DDX28-201ENST00000332395 ITGA7Q13683 1181 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 FAM26DQ5JW98 314 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 DCLRE1AQ6PJP8 1040 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 OR52K1Q8NGK4 314 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 MECRQ9BV79 373 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 TRIM62Q9BVG3 475 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 NOD2Q9HC29 1040 aa17.83■□□□□ 0.45
DDX28-201ENST00000332395 NLRC5Q86WI3 1866 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 CASP8AP2Q9UKL3 1982 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 A0A0G2JND7 137 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 TMEM88BA6NKF7 163 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 ZBTB24O43167 697 aaPredicted RBP17.83■□□□□ 0.44
DDX28-201ENST00000332395 ATP5HO75947 161 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 TGDSO95455 350 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 POLBP06746 335 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 KRT16P08779 473 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 ZBTB17Q13105 803 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 NAB1Q13506 487 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 PACS1Q6VY07 963 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 GBA3Q9H227 469 aa17.83■□□□□ 0.44
DDX28-201ENST00000332395 BRCA2P51587 3418 aa17.82■□□□□ 0.44
DDX28-201ENST00000332395 PATJQ8NI35 1801 aa17.82■□□□□ 0.44
DDX28-201ENST00000332395 CLGNO14967 610 aa17.82■□□□□ 0.44
DDX28-201ENST00000332395 USP12O75317 370 aa17.82■□□□□ 0.44
DDX28-201ENST00000332395 IGLV3-25P01717 112 aa17.82■□□□□ 0.44
DDX28-201ENST00000332395 TARSP26639 723 aaKnown RBP17.82■□□□□ 0.44
DDX28-201ENST00000332395 CD68P34810 354 aaPredicted RBP17.82■□□□□ 0.44
DDX28-201ENST00000332395 BEND5Q7L4P6 421 aa17.82■□□□□ 0.44
DDX28-201ENST00000332395 RPS6KL1Q9Y6S9 549 aa17.82■□□□□ 0.44
DDX28-201ENST00000332395 ARHGEF37A1IGU5 675 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 TYMPP19971 482 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 CLNS1AP54105 237 aaKnown RBP17.81■□□□□ 0.44
DDX28-201ENST00000332395 TEX44Q53QW1 395 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 SPANXN3Q5MJ09 141 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 SPDYAQ5MJ70 313 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 CES3Q6UWW8 571 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 MTDHQ86UE4 582 aaKnown RBP17.81■□□□□ 0.44
DDX28-201ENST00000332395 SPATA2LQ8IUW3 424 aaPredicted RBP17.81■□□□□ 0.44
DDX28-201ENST00000332395 TRIM42Q8IWZ5 723 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 OSBPL2Q9H1P3 480 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 SIRPGQ9P1W8 387 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 ZFP69BQ9UJL9 534 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 TRHDEQ9UKU6 1024 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 PSAT1Q9Y617 370 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 THSD7BQ9C0I4 1608 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 INPPL1O15357 1258 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 TOP3BO95985 862 aaKnown RBP17.81■□□□□ 0.44
DDX28-201ENST00000332395 SLC5A3P53794 718 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 YWHAHQ04917 246 aaPredicted RBP17.81■□□□□ 0.44
DDX28-201ENST00000332395 EIF4EBP2Q13542 120 aaPredicted RBP17.81■□□□□ 0.44
DDX28-201ENST00000332395 RIPK1Q13546 671 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 TAF1BQ53T94 588 aaPredicted RBP17.81■□□□□ 0.44
DDX28-201ENST00000332395 KCTD11Q693B1 232 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 ITPRIPL1Q6GPH6 555 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 RASSF3Q86WH2 238 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 STKLD1Q8NE28 680 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 CELF6Q96J87 481 aaKnown RBP17.81■□□□□ 0.44
DDX28-201ENST00000332395 VAT1Q99536 393 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 KCNK13Q9HB14 408 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 IL1RAPL1Q9NZN1 696 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 ZFATQ9P243 1243 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 VANGL2Q9ULK5 521 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 SQORQ9Y6N5 450 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 HTTP42858 3142 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 SHROOM3Q8TF72 1996 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 NUP205Q92621 2012 aa17.81■□□□□ 0.44
DDX28-201ENST00000332395 ERI2A8K979 691 aaKnown RBP17.8■□□□□ 0.44
DDX28-201ENST00000332395 IRAK2O43187 625 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 ALDH1A1P00352 501 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 ALDOAP04075 364 aaKnown RBP17.8■□□□□ 0.44
DDX28-201ENST00000332395 DLDP09622 509 aaKnown RBP17.8■□□□□ 0.44
DDX28-201ENST00000332395 SRGAP2BP0DMP2 458 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 NFKB1P19838 968 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 CYP2C18P33260 490 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 GRIK1P39086 918 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 ARFIP2P53365 341 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 TMPRSS15P98073 1019 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 SMAD1Q15797 465 aaKnown RBP17.8■□□□□ 0.44
DDX28-201ENST00000332395 C4orf50Q6ZRC1 276 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 ACMSDQ8TDX5 336 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 E2F7Q96AV8 911 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 CERS2Q96G23 380 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 FCRL3Q96P31 734 aaPredicted RBP17.8■□□□□ 0.44
DDX28-201ENST00000332395 PGLYRP2Q96PD5 576 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 MLPHQ9BV36 600 aaPredicted RBP17.8■□□□□ 0.44
DDX28-201ENST00000332395 LRMDAQ9H2I8 198 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 LRRC40Q9H9A6 602 aa17.8■□□□□ 0.44
DDX28-201ENST00000332395 CASS4Q9NQ75 786 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms