RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 ZNF304Q9HCX3 659 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 TUBE1Q9UJT0 475 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 ADGRA3Q8IWK6 1321 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 ASB14A6NK59 587 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 TIMM44O43615 452 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 CKBP12277 381 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 PECAM1P16284 738 aaPredicted RBP12.88□□□□□ -0.35
USP38-201ENST00000307017 FDFT1P37268 417 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 GUCA1AP43080 201 aaPredicted RBP12.88□□□□□ -0.35
USP38-201ENST00000307017 RHAGQ02094 409 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 MRNIPQ6NTE8 343 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 GHDCQ8N2G8 530 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 ZNF276Q8N554 614 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 NPAS2Q99743 824 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 NUDT12Q9BQG2 462 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 DDX43Q9NXZ2 648 aaKnown RBP12.88□□□□□ -0.35
USP38-201ENST00000307017 WHRNQ9P202 907 aa12.88□□□□□ -0.35
USP38-201ENST00000307017 FAM155BO75949 473 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 ANXA9O76027 345 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 SEMA5AQ13591 1074 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 PHKG1Q16816 387 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 GLB1LQ6UWU2 654 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 MTSS1LQ765P7 747 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 FAR1Q8WVX9 515 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 DCLK3Q9C098 648 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 C17orf102A2RUQ5 167 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 IL18RAPO95256 599 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 GTF2E2P29084 291 aaKnown RBP12.87□□□□□ -0.35
USP38-201ENST00000307017 HSPA13P48723 471 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 NDST1P52848 882 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 AP3M2P53677 418 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 MYBPC2Q14324 1141 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 MIIPQ5JXC2 388 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 USP7Q93009 1102 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 EXOC2Q96KP1 924 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 ALG2Q9H553 416 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 CAB39LQ9H9S4 337 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 PDGFCQ9NRA1 345 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 BTBD7Q9P203 1132 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 WDR35Q9P2L0 1181 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 MRASO14807 208 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 QPCTQ16769 361 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 UCMAQ8WVF2 138 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 DNAJB3Q8WWF6 145 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 OSBPL6Q9BZF3 934 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 ZDHHC6Q9H6R6 413 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 CASZ1Q86V15 1759 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 PIK3R1P27986 724 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 OR1E1P30953 314 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 RGS2P41220 211 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 PIK3CGP48736 1102 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 C1DQ13901 141 aaKnown RBP12.87□□□□□ -0.35
USP38-201ENST00000307017 LINC00523Q86TU6 105 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 MYRFQ9Y2G1 1151 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 MROH7Q68CQ1 1323 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 A0A075B6Q4 140 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 SYNCRIPO60506 623 aaKnown RBP12.87□□□□□ -0.35
USP38-201ENST00000307017 FCER2P06734 321 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 SLURP2P0DP57 97 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 SEPHS1P49903 392 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 NUP107P57740 925 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 CTXN3Q4LDR2 81 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 KLHL12Q53G59 568 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 KRT73Q86Y46 540 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 KIAA0895Q8NCT3 520 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 FAM45AQ8TCE6 357 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 NSMCE2Q96MF7 247 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 VPS33BQ9H267 617 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 KRCC1Q9NPI7 259 aaPredicted RBP12.87□□□□□ -0.35
USP38-201ENST00000307017 C15orf41Q9Y2V0 281 aa12.87□□□□□ -0.35
USP38-201ENST00000307017 CELF2O95319 508 aaKnown RBP12.86□□□□□ -0.35
USP38-201ENST00000307017 MSH3P20585 1137 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 CCR1P32246 355 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 ERVK-9P63128 1117 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 ZNF605Q86T29 641 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 ACTL9Q8TC94 416 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 SLITRK1Q96PX8 696 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 XPNPEP3Q9NQH7 507 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 FAM220BPB1ANY3 271 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 FADS2O95864 444 aaKnown RBP12.86□□□□□ -0.35
USP38-201ENST00000307017 KRT6AP02538 564 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 KRT6BP04259 564 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 H2AFXP16104 143 aaPredicted RBP12.86□□□□□ -0.35
USP38-201ENST00000307017 KRT20P35900 424 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 CD86P42081 329 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 GSTM5P46439 218 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 GALNT3Q14435 633 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 SNX17Q15036 470 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 RNF31Q96EP0 1072 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 TRAPPC9Q96Q05 1148 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 ALDH4A1P30038 563 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 GPAT3Q53EU6 434 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 TMC3Q7Z5M5 1100 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 LRRC40Q9H9A6 602 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 SPATA31E1Q6ZUB1 1445 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 UNC13AQ9UPW8 1703 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 A0A096LPK6 155 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 CCL15-CCL14A0A0B4J2E2 113 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 E7ENQ6 273 aa12.86□□□□□ -0.35
USP38-201ENST00000307017 PSMB4P28070 264 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms