RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 PTPN11Q06124 597 aaPredicted RBP11.18□□□□□ -0.62
LSM3-201ENST00000306024 PLEKHG4Q58EX7 1191 aa11.18□□□□□ -0.62
LSM3-201ENST00000306024 NT5DC4Q86YG4 428 aa11.18□□□□□ -0.62
LSM3-201ENST00000306024 ZCCHC9Q8N567 271 aaKnown RBP11.18□□□□□ -0.62
LSM3-201ENST00000306024 ZNF516Q92618 1163 aa11.18□□□□□ -0.62
LSM3-201ENST00000306024 PTCD3Q96EY7 689 aaKnown RBP11.18□□□□□ -0.62
LSM3-201ENST00000306024 HAPLN2Q9GZV7 340 aa11.18□□□□□ -0.62
LSM3-201ENST00000306024 DDX43Q9NXZ2 648 aaKnown RBP11.18□□□□□ -0.62
LSM3-201ENST00000306024 GTF3C4Q9UKN8 822 aa11.18□□□□□ -0.62
LSM3-201ENST00000306024 COQ6Q9Y2Z9 468 aa11.18□□□□□ -0.62
LSM3-201ENST00000306024 RBBP6Q7Z6E9 1792 aaKnown RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 HTR3EA5X5Y0 456 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 NDUFB5O43674 189 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 TFPTP0C1Z6 253 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 CST5P28325 142 aaPredicted RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 PPARGP37231 505 aaPredicted RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 RAP1GDS1P52306 607 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 ARPP19P56211 112 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 UBAP2LQ14157 1087 aaKnown RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 FASTKD3Q14CZ7 662 aaKnown RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 SV2CQ496J9 727 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 FBXO47Q5MNV8 452 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 KIAA1841Q6NSI8 718 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 IFNLR1Q8IU57 520 aaPredicted RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 HASPINQ8TF76 798 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 GAB3Q8WWW8 586 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 C18orf25Q96B23 403 aaPredicted RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 CFHR5Q9BXR6 569 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 CHST12Q9NRB3 414 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 MYOCOSA0A1B0GUC4 107 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 SPTLC1O15269 473 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 CSPG5O95196 566 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 XIAPP98170 497 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 STX3Q13277 289 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 TBCCQ15814 346 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 GPR141Q7Z602 305 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 NECAB2Q7Z6G3 386 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 TTC39CQ8N584 583 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 ZFP28Q8NHY6 868 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 RNF39Q9H2S5 420 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 FAM49BQ9NUQ9 324 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 MYO9BQ13459 2157 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 ARHGEF37A1IGU5 675 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 M0QYV0 167 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 BANF1O75531 89 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 ESRRBO95718 433 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 CYP11B1P15538 503 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 NELFEP18615 380 aaKnown RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 PNPLA4P41247 253 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 JAM2P57087 298 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 SNX16P57768 344 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 OTUD4Q01804 1114 aaKnown RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 IFRD2Q12894 506 aaPredicted RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 C2CD6Q53TS8 623 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 PLEKHA7Q6IQ23 1121 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 RHOT1Q8IXI2 618 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 C1orf127Q8N9H9 656 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 TSPAN14Q8NG11 270 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 DCUN1D1Q96GG9 259 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 SCLYQ96I15 445 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 PAWRQ96IZ0 340 aaKnown RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 NT5C1AQ9BXI3 368 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 AGO3Q9H9G7 860 aaKnown RBP11.17□□□□□ -0.62
LSM3-201ENST00000306024 USP29Q9HBJ7 922 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 GOLGA2P5Q9HBQ8 144 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 TBCCD1Q9NVR7 557 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 DNAJB4Q9UDY4 337 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 PARP14Q460N5 1801 aa11.17□□□□□ -0.62
LSM3-201ENST00000306024 SMIM28A0A1B0GU29 152 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 FSCN2O14926 492 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 SEC24DO94855 1032 aaPredicted RBP11.16□□□□□ -0.62
LSM3-201ENST00000306024 KLHL2O95198 593 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 ASS1P00966 412 aaKnown RBP11.16□□□□□ -0.62
LSM3-201ENST00000306024 CALCAP01258 141 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 CKBP12277 381 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 KRT10P13645 584 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 ATICP31939 592 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 CAP1Q01518 475 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 CYP1B1Q16678 543 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 SYCP2LQ5T4T6 812 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 DENND5BQ6ZUT9 1274 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 ZDHHC14Q8IZN3 488 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 DBF4BQ8NFT6 615 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 DIS3LQ8TF46 1054 aaKnown RBP11.16□□□□□ -0.62
LSM3-201ENST00000306024 CPA5Q8WXQ8 436 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 KCNK4Q9NYG8 393 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 AIM2O14862 343 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 CHRNA1P02708 482 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 ADORA2BP29275 332 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 ENTPD1P49961 510 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 FLOT2Q14254 428 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 MYLK3Q32MK0 819 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 DUS1LQ6P1R4 473 aaKnown RBP11.16□□□□□ -0.62
LSM3-201ENST00000306024 KREMEN1Q96MU8 473 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 CYLDQ9NQC7 956 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 FAIMQ9NVQ4 179 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 TADA2AO75478 443 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 KRT75O95678 551 aa11.16□□□□□ -0.62
LSM3-201ENST00000306024 EEF1DP29692 281 aaKnown RBP11.16□□□□□ -0.62
LSM3-201ENST00000306024 TSPY1Q01534 308 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms