RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 ARHGAP17Q68EM7 881 aa9.54□□□□□ -0.88
PRDM9-201ENST00000296682 KIAA1841Q6NSI8 718 aa9.54□□□□□ -0.88
PRDM9-201ENST00000296682 ALYREFQ86V81 257 aaKnown RBP9.54□□□□□ -0.88
PRDM9-201ENST00000296682 LRRTM3Q86VH5 581 aa9.54□□□□□ -0.88
PRDM9-201ENST00000296682 ZDHHC17Q8IUH5 632 aa9.54□□□□□ -0.88
PRDM9-201ENST00000296682 ATPAF2Q8N5M1 289 aa9.54□□□□□ -0.88
PRDM9-201ENST00000296682 POU5F2Q8N7G0 328 aa9.54□□□□□ -0.88
PRDM9-201ENST00000296682 SLC44A1Q8WWI5 657 aa9.54□□□□□ -0.88
PRDM9-201ENST00000296682 CCDC124Q96CT7 223 aaKnown RBP9.54□□□□□ -0.88
PRDM9-201ENST00000296682 SMARCD1Q96GM5 515 aa9.54□□□□□ -0.88
PRDM9-201ENST00000296682 HCSTQ9UBK5 93 aa9.54□□□□□ -0.88
PRDM9-201ENST00000296682 GOLGA8QA0A0J9YX86 632 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 MBLAC1A4D2B0 266 aaPredicted RBP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 GOLGA8OA6NCC3 632 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 GOLGA8NF8WBI6 632 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 EDF1O60869 148 aaKnown RBP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 CXCR3P49682 368 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 GATMP50440 423 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 SLC12A2P55011 1212 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 DAOAP59103 153 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 NCALDP61601 193 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 MGAT5Q09328 741 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 PRPSAP1Q14558 356 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 NAA25Q14CX7 972 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 DPYSL2Q16555 572 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 NOMO2Q5JPE7 1267 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 TAC4Q86UU9 113 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 CIR1Q86X95 450 aaPredicted RBP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 CNPY4Q8N129 248 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 AGGF1Q8N302 714 aaeCLIP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 EFCAB3Q8N7B9 438 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 DHRS4Q9BTZ2 278 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 PPP1R12CQ9BZL4 782 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 RXFP1Q9HBX9 757 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 ANLNQ9NQW6 1124 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 RBM22Q9NW64 420 aaKnown RBP eCLIP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 MTMR10Q9NXD2 777 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 TLK1Q9UKI8 766 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 PACSIN3Q9UKS6 424 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 FZD10Q9ULW2 581 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 DCTN3O75935 186 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 VAPBO95292 243 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 PTPN9P43378 593 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 EPHB1P54762 984 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 CCL23P55773 120 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 CTBP1Q13363 440 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 ITGA9Q13797 1035 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 GEN1Q17RS7 908 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 C10orf120Q5SQS8 335 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 SOCS4Q8WXH5 440 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 PRR11Q96HE9 360 aaPredicted RBP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 GPBP1L1Q9HC44 474 aaPredicted RBP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 XAB2Q9HCS7 855 aaKnown RBP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 SSU72Q9NP77 194 aaKnown RBP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 MAN1C1Q9NR34 630 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 ZMYND8Q9ULU4 1186 aaPredicted RBP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 CHKBQ9Y259 395 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 DERAQ9Y315 318 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 TSPAN3O60637 253 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 PQBP1O60828 265 aaKnown RBP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 MT-CO1P00395 513 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 IRF1P10914 325 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 CGB2Q6NT52 195 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 C17orf99Q6UX52 265 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 SUGP1Q8IWZ8 645 aaKnown RBP9.53□□□□□ -0.88
PRDM9-201ENST00000296682 TOP6BLQ8N6T0 577 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 CFAP61Q8NHU2 1237 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 APOPT1Q96IL0 206 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 ZNF778Q96MU6 729 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 FAM167BQ9BTA0 163 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 PPCSQ9HAB8 311 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 TXLNGQ9NUQ3 528 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 RNF186Q9NXI6 227 aa9.53□□□□□ -0.88
PRDM9-201ENST00000296682 BCLAF3A2AJT9 711 aaKnown RBP9.52□□□□□ -0.88
PRDM9-201ENST00000296682 TSHRP16473 764 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 RPL17P18621 184 aaKnown RBP9.52□□□□□ -0.88
PRDM9-201ENST00000296682 CHRNA4P43681 627 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 USP10Q14694 798 aaKnown RBP9.52□□□□□ -0.88
PRDM9-201ENST00000296682 CTXN3Q4LDR2 81 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 PKDCCQ504Y2 493 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 FASTKD1Q53R41 847 aaKnown RBP9.52□□□□□ -0.88
PRDM9-201ENST00000296682 SPDYAQ5MJ70 313 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 SLC9A4Q6AI14 798 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 ARCQ7LC44 396 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 STRADAQ7RTN6 431 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 CFAP52Q8N1V2 620 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 DQX1Q8TE96 717 aaKnown RBP9.52□□□□□ -0.88
PRDM9-201ENST00000296682 TEKT4Q8WW24 435 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 FCRL2Q96LA5 508 aaPredicted RBP9.52□□□□□ -0.88
PRDM9-201ENST00000296682 FICDQ9BVA6 458 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 DMAP1Q9NPF5 467 aaPredicted RBP9.52□□□□□ -0.88
PRDM9-201ENST00000296682 STARD7Q9NQZ5 370 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 DNAJB4Q9UDY4 337 aa9.52□□□□□ -0.88
PRDM9-201ENST00000296682 B2RBV5 119 aa9.52□□□□□ -0.89
PRDM9-201ENST00000296682 E7ESA3 106 aa9.52□□□□□ -0.89
PRDM9-201ENST00000296682 CHUKO15111 745 aa9.52□□□□□ -0.89
PRDM9-201ENST00000296682 HSPA4LO95757 839 aa9.52□□□□□ -0.89
PRDM9-201ENST00000296682 KCNE1P15382 129 aa9.52□□□□□ -0.89
PRDM9-201ENST00000296682 THOC5Q13769 683 aaKnown RBP9.52□□□□□ -0.89
PRDM9-201ENST00000296682 VWA5B1Q5TIE3 1220 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms