RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RAP1GAP2Q684P5 730 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 NADSYN1Q6IA69 706 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 TRMT10CQ7L0Y3 403 aaKnown RBP14.49□□□□□ -0.09
SS18-201ENST00000269137 UMODL1-AS1Q8N2C9 162 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 NETO2Q8NC67 525 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 CCDC110Q8TBZ0 833 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 SLC22A17Q8WUG5 538 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 MRPS31Q92665 395 aaKnown RBP14.49□□□□□ -0.09
SS18-201ENST00000269137 RAB6BQ9NRW1 208 aa14.49□□□□□ -0.09
SS18-201ENST00000269137 YBX2Q9Y2T7 364 aaKnown RBP14.49□□□□□ -0.09
SS18-201ENST00000269137 MYO18AQ92614 2054 aaKnown RBP14.48□□□□□ -0.09
SS18-201ENST00000269137 AGPSO00116 658 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 RNF103O00237 685 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 TACR2P21452 398 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 EPHA5P54756 1037 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 CBLBQ13191 982 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 FAM133BQ5BKY9 247 aaKnown RBP14.48□□□□□ -0.09
SS18-201ENST00000269137 ANKRD20A2Q5SQ80 823 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 ANKRD20A1Q5TYW2 823 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 ANKRD20A3Q5VUR7 823 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 LRIG3Q6UXM1 1119 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 CCDC25Q86WR0 208 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 CHSY1Q86X52 802 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 HS6ST3Q8IZP7 471 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 IGSF8Q969P0 613 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 ZFRQ96KR1 1074 aaKnown RBP14.48□□□□□ -0.09
SS18-201ENST00000269137 EPB41L4BQ9H329 900 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 GKN1Q9NS71 199 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 ZNF212Q9UDV6 495 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 RANBP2P49792 3224 aaKnown RBP14.48□□□□□ -0.09
SS18-201ENST00000269137 F5H5T6 163 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 FGF19O95750 216 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 LATS1O95835 1130 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 KLKB1P03952 638 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 HNRNPA1P09651 372 aaKnown RBP eCLIP14.48□□□□□ -0.09
SS18-201ENST00000269137 MBL2P11226 248 aaPredicted RBP14.48□□□□□ -0.09
SS18-201ENST00000269137 HDCP19113 662 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 CCNCP24863 283 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 NDST2P52849 883 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 BASP1P80723 227 aaKnown RBP14.48□□□□□ -0.09
SS18-201ENST00000269137 COL13A1Q5TAT6 717 aaPredicted RBP14.48□□□□□ -0.09
SS18-201ENST00000269137 ANKRD22Q5VYY1 191 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 TXNDC8Q6A555 127 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 ARHGEF18Q6ZSZ5 1173 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 CCDC13Q8IYE1 715 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 UBLCP1Q8WVY7 318 aaPredicted RBP14.48□□□□□ -0.09
SS18-201ENST00000269137 CELF6Q96J87 481 aaKnown RBP14.48□□□□□ -0.09
SS18-201ENST00000269137 ZIM3Q96PE6 472 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 RBM15Q96T37 977 aaKnown RBP eCLIP14.48□□□□□ -0.09
SS18-201ENST00000269137 VAT1Q99536 393 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 GDF15Q99988 308 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 FRMD8Q9BZ67 464 aaPredicted RBP14.48□□□□□ -0.09
SS18-201ENST00000269137 SEMA4AQ9H3S1 761 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 MAN1C1Q9NR34 630 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 ASAH2Q9NR71 780 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 NDFIP2Q9NV92 336 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 DPP7Q9UHL4 492 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 STOML2Q9UJZ1 356 aa14.48□□□□□ -0.09
SS18-201ENST00000269137 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.47□□□□□ -0.09
SS18-201ENST00000269137 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.47□□□□□ -0.09
SS18-201ENST00000269137 H0YGN5 161 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 EIF3HO15372 352 aaKnown RBP eCLIP14.47□□□□□ -0.09
SS18-201ENST00000269137 CCL16O15467 120 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 CNTN5O94779 1100 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 CSPG5O95196 566 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 NUDT17P0C025 328 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 PTPN3P26045 913 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 CORO1AP31146 461 aaKnown RBP14.47□□□□□ -0.09
SS18-201ENST00000269137 FDFT1P37268 417 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 IRAK1P51617 712 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 SLC7A9P82251 487 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 ALFQ53S48 1182 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 DENND1CQ8IV53 801 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 ZNF567Q8N184 647 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 ATPAF2Q8N5M1 289 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 EXOC4Q96A65 974 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 PWWP2AQ96N64 755 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 RPRD1AQ96P16 312 aaPredicted RBP14.47□□□□□ -0.09
SS18-201ENST00000269137 GCNAQ96QF7 691 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 SLC22A12Q96S37 553 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 DDX50Q9BQ39 737 aaKnown RBP14.47□□□□□ -0.09
SS18-201ENST00000269137 SLC39A8Q9C0K1 460 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 NOL6Q9H6R4 1146 aaKnown RBP14.47□□□□□ -0.09
SS18-201ENST00000269137 ETNK1Q9HBU6 452 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 TRPC7Q9HCX4 862 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 MED4Q9NPJ6 270 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 TRHDEQ9UKU6 1024 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 PLAAQ9Y263 795 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 NFS1Q9Y697 457 aa14.47□□□□□ -0.09
SS18-201ENST00000269137 GOLGA6L7A0A1B0GV03 622 aa14.46□□□□□ -0.09
SS18-201ENST00000269137 TCRBV7S3A2A0A539 114 aa14.46□□□□□ -0.09
SS18-201ENST00000269137 TMEM63AO94886 807 aa14.46□□□□□ -0.09
SS18-201ENST00000269137 METTL18O95568 372 aa14.46□□□□□ -0.09
SS18-201ENST00000269137 POU2F2P09086 479 aa14.46□□□□□ -0.09
SS18-201ENST00000269137 PBX2P40425 430 aa14.46□□□□□ -0.09
SS18-201ENST00000269137 MAPKAPK2P49137 400 aa14.46□□□□□ -0.09
SS18-201ENST00000269137 ARL4CP56559 192 aa14.46□□□□□ -0.09
SS18-201ENST00000269137 SEMA5AQ13591 1074 aa14.46□□□□□ -0.09
SS18-201ENST00000269137 HIF1AQ16665 826 aa14.46□□□□□ -0.09
SS18-201ENST00000269137 PARP6Q2NL67 630 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms