RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 NEPROQ6NW34 567 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 LPCAT2Q7L5N7 544 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 PSTKQ8IV42 348 aaKnown RBP10.97□□□□□ -0.65
CD44-201ENST00000263398 C12orf56Q8IXR9 622 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 DLG3Q92796 817 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 ZFYVE19Q96K21 471 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 ACOX2Q99424 681 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 TNFSF13BQ9Y275 285 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 PCDHB5Q9Y5E4 795 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 NFASCO94856 1347 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 TBC1D12O60347 775 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 GSNP06396 782 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 RPL14P50914 215 aaKnown RBP10.97□□□□□ -0.65
CD44-201ENST00000263398 RTP1P59025 263 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 EVX2Q03828 476 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 DDR1Q08345 913 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 XRCC4Q13426 336 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 FAM126BQ8IXS8 530 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 CARNMT1Q8N4J0 409 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 ACMSDQ8TDX5 336 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 CDK5RAP1Q96SZ6 601 aaKnown RBP10.97□□□□□ -0.65
CD44-201ENST00000263398 SEPHS2Q99611 448 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 AAASQ9NRG9 546 aa10.97□□□□□ -0.65
CD44-201ENST00000263398 KRT87PA6NCN2 255 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 SLC2A4P14672 509 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 ITGB5P18084 799 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 OR1E1P30953 314 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 NAGLUP54802 743 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 NCKAP1LP55160 1127 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 CDC16Q13042 620 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 FRG1Q14331 258 aaKnown RBP10.96□□□□□ -0.65
CD44-201ENST00000263398 GLMNQ92990 594 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 ULBP1Q9BZM6 244 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 ATXN3LQ9H3M9 355 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 KANSL3Q9P2N6 904 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 RABGEF1Q9UJ41 708 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 hCG_1818297A0A087WSY0 165 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 STK25O00506 426 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 CNOT3O75175 753 aaKnown RBP10.96□□□□□ -0.65
CD44-201ENST00000263398 RECQL4O94761 1208 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 CALCAP01258 141 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 ZNF7P17097 686 aaPredicted RBP10.96□□□□□ -0.65
CD44-201ENST00000263398 HALP42357 657 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 MMP13P45452 471 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 BLVRAP53004 296 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 NCALDP61601 193 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 BST1Q10588 318 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 PREPLQ4J6C6 727 aaPredicted RBP10.96□□□□□ -0.65
CD44-201ENST00000263398 OTUD3Q5T2D3 398 aaPredicted RBP10.96□□□□□ -0.65
CD44-201ENST00000263398 ARCQ7LC44 396 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 MIER2Q8N344 545 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 FNDC5Q8NAU1 212 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 OR56A4Q8NGH8 313 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 METTL6Q8TCB7 284 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 OPTNQ96CV9 577 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 TBL1YQ9BQ87 522 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 XPNPEP3Q9NQH7 507 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 COPG2Q9UBF2 871 aa10.96□□□□□ -0.65
CD44-201ENST00000263398 GNG14A0A1W2PPG7 69 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 ALOX15BO15296 676 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 PHGDHO43175 533 aaKnown RBP10.96□□□□□ -0.66
CD44-201ENST00000263398 SYNCRIPO60506 623 aaKnown RBP10.96□□□□□ -0.66
CD44-201ENST00000263398 POMCP01189 267 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 ERVK-10P10266 1014 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 TKTP29401 623 aaKnown RBP10.96□□□□□ -0.66
CD44-201ENST00000263398 CYP2C18P33260 490 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 GPC1P35052 558 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 CHKAP35790 457 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 CAMK2GQ13555 558 aaPredicted RBP10.96□□□□□ -0.66
CD44-201ENST00000263398 ARSHQ5FYA8 562 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 PLEKHA7Q6IQ23 1121 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 TMEM86AQ8N2M4 240 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 B3GALNT2Q8NCR0 500 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 LPCAT1Q8NF37 534 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 SNRNP25Q9BV90 132 aaKnown RBP10.96□□□□□ -0.66
CD44-201ENST00000263398 FAM192AQ9GZU8 254 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 TKTL2Q9H0I9 626 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 CDHR5Q9HBB8 845 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 RPL26L1Q9UNX3 145 aaKnown RBP10.96□□□□□ -0.66
CD44-201ENST00000263398 FAM237BA0A1B0GVD1 139 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 TPP1O14773 563 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 RAD51BO15315 384 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 VPS4BO75351 444 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 ALDH2P05091 517 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 PSMD7P51665 324 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 RPL7AP62424 266 aaKnown RBP10.96□□□□□ -0.66
CD44-201ENST00000263398 KCNJ2P63252 427 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.96□□□□□ -0.66
CD44-201ENST00000263398 PGS1Q32NB8 556 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 SLC44A2Q8IWA5 706 aaPredicted RBP10.96□□□□□ -0.66
CD44-201ENST00000263398 CERS5Q8N5B7 392 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 CERS2Q96G23 380 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 ITM2BQ9Y287 266 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 MYRFQ9Y2G1 1151 aa10.96□□□□□ -0.66
CD44-201ENST00000263398 ZNF839A8K0R7 811 aa10.95□□□□□ -0.66
CD44-201ENST00000263398 LZTS3O60299 673 aaPredicted RBP10.95□□□□□ -0.66
CD44-201ENST00000263398 NPM3O75607 178 aaKnown RBP10.95□□□□□ -0.66
CD44-201ENST00000263398 SMNDC1O75940 238 aaKnown RBP eCLIP10.95□□□□□ -0.66
CD44-201ENST00000263398 CPSF4O95639 269 aaKnown RBP10.95□□□□□ -0.66
CD44-201ENST00000263398 SOX6P35712 828 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms