RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 SGCGQ13326 291 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PTGES3Q15185 160 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 INAVAQ3KP66 663 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ZRANB3Q5FWF4 1079 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CSGALNACT1Q8TDX6 532 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 SLC35C1Q96A29 364 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 C17orf80Q9BSJ5 609 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PRPF19Q9UMS4 504 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 NHSL1Q5SYE7 1610 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 DOT1LQ8TEK3 1739 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 IRAK2O43187 625 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 LZTS3O60299 673 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 SEC31AO94979 1220 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PRDX6P30041 224 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CORO7P57737 925 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PLD3Q8IV08 490 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 KIAA0895Q8NCT3 520 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 IPMKQ8NFU5 416 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 RAB11FIP5Q9BXF6 653 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 IMPAD1Q9NX62 359 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ENO4A6NNW6 628 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 TRIM13O60858 407 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 MICAL2O94851 1124 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CATP04040 527 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 RPSAP08865 295 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CPA3P15088 417 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CSNK2BP67870 215 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ELP6Q0PNE2 266 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 TPGS2Q68CL5 300 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 SRFBP1Q8NEF9 429 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ETNPPLQ8TBG4 499 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 STAG3L4Q8TBR4 150 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 RASSF5Q8WWW0 418 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF514Q96K75 400 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF599Q96NL3 588 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 GPR101Q96P66 508 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PRMT1Q99873 361 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 SARS2Q9NP81 518 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ADGRE2Q9UHX3 823 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF180Q9UJW8 692 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 VPS28Q9UK41 221 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PCDHA2Q9Y5H9 948 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ATP9BO43861 1147 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CYP2B6P20813 491 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PPM1LQ5SGD2 360 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 RAD9BQ6WBX8 426 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 IKBIPQ70UQ0 350 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 RXFP2Q8WXD0 754 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 HSD17B14Q9BPX1 270 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PACSIN1Q9BY11 444 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 RGPD2P0DJD1 1756 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 FAM220BPB1ANY3 271 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 RAG1P15918 1043 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ERCC2P18074 760 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ADRA1DP25100 572 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 SERPINB1P30740 379 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ASMTP46597 345 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CLK3P49761 638 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 SLC18A1P54219 525 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 RHBDL3P58872 404 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CDK18Q07002 472 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 HECTD3Q5T447 861 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 RGS9BPQ6ZS82 235 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ABHD8Q96I13 439 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 TMEM109Q9BVC6 243 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 UBP1Q9NZI7 540 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 A0A087X0T9 212 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 NCK2O43639 380 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CLDN11O75508 207 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 FKBP9O95302 570 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CKMP06732 381 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 USP17L7P0C7H9 530 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 FAM228BP0C875 321 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 FGFR1P11362 822 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ENO3P13929 434 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 TMEM44Q2T9K0 475 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 CROCCP3Q8IVE0 287 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ZNF526Q8TF50 670 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PPP1R10Q96QC0 940 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 DUSP16Q9BY84 665 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 FAM126AQ9BYI3 521 aaPredicted RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 A1CFQ9NQ94 594 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 ASAH2Q9NR71 780 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PCMTD2Q9NV79 361 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 MARCH2Q9P0N8 246 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 WARS2Q9UGM6 360 aaKnown RBP4.4□□□□□ -1.71
VPS13C-202ENST00000261517 TSPAN16Q9UKR8 245 aa4.4□□□□□ -1.71
VPS13C-202ENST00000261517 PSMD12O00232 456 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 MOCS2O96007 188 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 ERVK-10P10266 1014 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 TXNL4AP83876 142 aaKnown RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 SQLEQ14534 574 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 LSM12Q3MHD2 195 aaKnown RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 ZC2HC1CQ53FD0 456 aaPredicted RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 P3H2Q8IVL5 708 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 PEX13Q92968 403 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 CDCA5Q96FF9 252 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 CNDP1Q96KN2 507 aa4.39□□□□□ -1.71
VPS13C-202ENST00000261517 CELF4Q9BZC1 486 aaKnown RBP4.39□□□□□ -1.71
VPS13C-202ENST00000261517 THAP2Q9H0W7 228 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms