RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 FBXO36Q8NEA4 188 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 GLIS3Q8NEA6 775 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 POP5Q969H6 163 aaKnown RBP13.97□□□□□ -0.17
LDLR-201ENST00000252444 APPL1Q9UKG1 709 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 PCDHGB4Q9UN71 923 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 CBX4O00257 560 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 CYP2A7P20853 494 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 ASPAP45381 313 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 SKP1P63208 163 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 ATAT1Q5SQI0 421 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 POTEHQ6S545 545 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 CFAP61Q8NHU2 1237 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 MS4A4AQ96JQ5 239 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 HAPLN3Q96S86 360 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 TASP1Q9H6P5 420 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 L3MBTL1Q9Y468 752 aa13.97□□□□□ -0.17
LDLR-201ENST00000252444 ARHGAP10A1A4S6 786 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 F8VP50 259 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 TBC1D4O60343 1298 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 MAD2L1Q13257 205 aaPredicted RBP13.96□□□□□ -0.17
LDLR-201ENST00000252444 SLC12A1Q13621 1099 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 EDEM1Q92611 657 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 TLE6Q9H808 572 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 AKAP11Q9UKA4 1901 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 TLR5O60602 858 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 RB1P06400 928 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 SERPINH1P50454 418 aaKnown RBP13.96□□□□□ -0.17
LDLR-201ENST00000252444 ZNF618Q5T7W0 954 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 ARCQ7LC44 396 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 EIF2AQ9BY44 585 aaKnown RBP13.96□□□□□ -0.17
LDLR-201ENST00000252444 ESYT3A0FGR9 886 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 LATS1O95835 1130 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 CCNCP24863 283 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 CARSP49589 748 aaKnown RBP13.96□□□□□ -0.17
LDLR-201ENST00000252444 ADCY1Q08828 1119 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 VARS2Q5ST30 1063 aaKnown RBP13.96□□□□□ -0.17
LDLR-201ENST00000252444 BTBD6Q96KE9 485 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 LMAN2LQ9H0V9 348 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 SARS2Q9NP81 518 aaKnown RBP13.96□□□□□ -0.17
LDLR-201ENST00000252444 CD274Q9NZQ7 290 aa13.96□□□□□ -0.17
LDLR-201ENST00000252444 BCLAF3A2AJT9 711 aaKnown RBP13.96□□□□□ -0.18
LDLR-201ENST00000252444 PMPCBO75439 489 aa13.96□□□□□ -0.18
LDLR-201ENST00000252444 SP2Q02086 613 aa13.96□□□□□ -0.18
LDLR-201ENST00000252444 SEMA4DQ92854 862 aa13.96□□□□□ -0.18
LDLR-201ENST00000252444 EIF2B3Q9NR50 452 aaKnown RBP13.96□□□□□ -0.18
LDLR-201ENST00000252444 LNPEPQ9UIQ6 1025 aa13.96□□□□□ -0.18
LDLR-201ENST00000252444 LRRC37AA6NMS7 1700 aa13.96□□□□□ -0.18
LDLR-201ENST00000252444 CASQ2O14958 399 aaPredicted RBP13.95□□□□□ -0.18
LDLR-201ENST00000252444 ESRRBO95718 433 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 NLRP14Q86W24 1093 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 CCNYL1Q8N7R7 359 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 CATSPER1Q8NEC5 780 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 ZNF296Q8WUU4 475 aaPredicted RBP13.95□□□□□ -0.18
LDLR-201ENST00000252444 TOX2Q96NM4 488 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 EPN3Q9H201 632 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 ETNK2Q9NVF9 386 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 CDYLQ9Y232 598 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 FNDC3AQ9Y2H6 1198 aaKnown RBP13.95□□□□□ -0.18
LDLR-201ENST00000252444 CCND3P30281 292 aaPredicted RBP13.95□□□□□ -0.18
LDLR-201ENST00000252444 SGCGQ13326 291 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 DPYSL3Q14195 570 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 RDH11Q8TC12 318 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 ERVK-5Q9HDB9 667 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 VTI1BQ9UEU0 232 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 SUPT3HO75486 399 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 MSH3P20585 1137 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 OR1D2P34982 312 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 HSD17B3P37058 310 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 CLCN5P51795 746 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 TLE2Q04725 743 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 FNDC3BQ53EP0 1204 aaKnown RBP13.95□□□□□ -0.18
LDLR-201ENST00000252444 KCNT2Q6UVM3 1135 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 C7orf61Q8IZ16 206 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 PCYOX1LQ8NBM8 494 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 VPS37AQ8NEZ2 397 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 KCNN1Q92952 543 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 KLHL29Q96CT2 875 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 SGIP1Q9BQI5 828 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 HERC2P3Q9BVR0 1158 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 IL23AQ9NPF7 189 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 HNRNPA1P09651 372 aaKnown RBP eCLIP13.95□□□□□ -0.18
LDLR-201ENST00000252444 PYGMP11217 842 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 NCF2P19878 526 aaPredicted RBP13.95□□□□□ -0.18
LDLR-201ENST00000252444 C16orf89Q6UX73 402 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 MRPL10Q7Z7H8 261 aaKnown RBP13.95□□□□□ -0.18
LDLR-201ENST00000252444 BLOC1S5Q8TDH9 187 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 USP6NLQ92738 828 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 GPATCH2LQ9NWQ4 482 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 HES2Q9Y543 173 aa13.95□□□□□ -0.18
LDLR-201ENST00000252444 MBLAC1A4D2B0 266 aaPredicted RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 APODP05090 189 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 TPBGLP0DKB5 382 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 ARL4DP49703 201 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 MSLNQ13421 630 aaPredicted RBP13.94□□□□□ -0.18
LDLR-201ENST00000252444 GRAMD4Q6IC98 578 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 B3GNT9Q6UX72 402 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 ATL1Q8WXF7 558 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 OR8D1Q8WZ84 308 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 OTUB2Q96DC9 234 aa13.94□□□□□ -0.18
LDLR-201ENST00000252444 MCRS1Q96EZ8 462 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 109.8 ms