RNA–Protein interactions for RNA: ENST00000248948.3

VPREB3-201, Transcript of V-set pre-B cell surrogate light chain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPREB3, Length 610 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPREB3-201ENST00000248948 CCDC14Q49A88 953 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 FNDC3BQ53EP0 1204 aaKnown RBP13.17□□□□□ -0.3
VPREB3-201ENST00000248948 FSCBQ5H9T9 825 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 SPDYCQ5MJ68 293 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 PPP1R15BQ5SWA1 713 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 CXorf57Q6NSI4 855 aaKnown RBP13.17□□□□□ -0.3
VPREB3-201ENST00000248948 ZNF571Q7Z3V5 609 aaPredicted RBP13.17□□□□□ -0.3
VPREB3-201ENST00000248948 METTL3Q86U44 580 aaKnown RBP13.17□□□□□ -0.3
VPREB3-201ENST00000248948 CIR1Q86X95 450 aaPredicted RBP13.17□□□□□ -0.3
VPREB3-201ENST00000248948 FAM131BQ86XD5 332 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 ZNF683Q8IZ20 524 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 MCOLN2Q8IZK6 566 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 PGBD3Q8N328 593 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 JOSD2Q8TAC2 188 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 SORCS1Q8WY21 1168 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 CENPIQ92674 756 aaPredicted RBP13.17□□□□□ -0.3
VPREB3-201ENST00000248948 IGSF8Q969P0 613 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 TRIM11Q96F44 468 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 MRGPRX1Q96LB2 322 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 PPP1R9BQ96SB3 815 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 DUSP15Q9H1R2 295 aaPredicted RBP13.17□□□□□ -0.3
VPREB3-201ENST00000248948 ANLNQ9NQW6 1124 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 INTS6Q9UL03 887 aaKnown RBP13.17□□□□□ -0.3
VPREB3-201ENST00000248948 CAPN11Q9UMQ6 739 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 CEP250Q9BV73 2442 aa13.17□□□□□ -0.3
VPREB3-201ENST00000248948 ABCA7Q8IZY2 2146 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 WASH3PC4AMC7 463 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 EPHX1P07099 455 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 RRM1P23921 792 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 RFC1P35251 1148 aaPredicted RBP13.16□□□□□ -0.3
VPREB3-201ENST00000248948 GGCXP38435 758 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 ZNF143P52747 638 aaPredicted RBP13.16□□□□□ -0.3
VPREB3-201ENST00000248948 ATXN1P54253 815 aaKnown RBP13.16□□□□□ -0.3
VPREB3-201ENST00000248948 HDAC4P56524 1084 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 ST8SIA6P61647 398 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 ATP11AP98196 1134 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 SULT2A1Q06520 285 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 CDO1Q16878 200 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 LRRC31Q6UY01 552 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 SLC36A4Q6YBV0 504 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 VPS36Q86VN1 386 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 CYB5D2Q8WUJ1 264 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 NTAN1Q96AB6 310 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 MYO19Q96H55 970 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 MCEEQ96PE7 176 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 XPO4Q9C0E2 1151 aaKnown RBP13.16□□□□□ -0.3
VPREB3-201ENST00000248948 TBC1D30Q9Y2I9 924 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.16□□□□□ -0.3
VPREB3-201ENST00000248948 SPTBN4Q9H254 2564 aa13.16□□□□□ -0.3
VPREB3-201ENST00000248948 TP53BP1Q12888 1972 aaPredicted RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 E9PAM4 449 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 IGLV3-19P01714 112 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 SERPING1P05155 500 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 MYBL1P10243 752 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 BCKDHBP21953 392 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 DPP6P42658 865 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 VASPP50552 380 aaPredicted RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 IRAK1P51617 712 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 COPAP53621 1224 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 AIF1P55008 147 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 LMNB2Q03252 620 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 SCAPQ12770 1279 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 ZNF177Q13360 481 aaPredicted RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 CSRP2Q16527 193 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 C15orf59Q2T9L4 293 aaPredicted RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 TDRD12Q587J7 1177 aaKnown RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 RNF219Q5W0B1 726 aaPredicted RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 HGSNATQ68CP4 663 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 WDR59Q6PJI9 974 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 LPCAT2Q7L5N7 544 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 SETD3Q86TU7 594 aaPredicted RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 OR2T3Q8NH03 318 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 FAM172AQ8WUF8 416 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 PRCCQ92733 491 aaPredicted RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 MRGPRX3Q96LB0 322 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 CNPY3Q9BT09 278 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 MKRN2Q9H000 416 aaKnown RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 SIK2Q9H0K1 926 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 RETREG1Q9H6L5 497 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 PRDM16Q9HAZ2 1276 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 PARVAQ9NVD7 372 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 TAS2R14Q9NYV8 317 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 USP36Q9P275 1121 aaKnown RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 PPARGC1AQ9UBK2 798 aaKnown RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 LUC7L2Q9Y383 392 aaKnown RBP13.15□□□□□ -0.3
VPREB3-201ENST00000248948 SCINQ9Y6U3 715 aa13.15□□□□□ -0.3
VPREB3-201ENST00000248948 IGHV1OR15-9A0A0B4J2B8 117 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 DRGXA6NNA5 263 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 DDX3XO00571 662 aaKnown RBP eCLIP13.14□□□□□ -0.31
VPREB3-201ENST00000248948 DCLK1O15075 740 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 AP5Z1O43299 807 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 CCP110O43303 1012 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 RTN2O75298 545 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 GJB6O95452 261 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 TGM1P22735 817 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 MPLP40238 635 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 ECT2LQ008S8 904 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 ZBTB16Q05516 673 aa13.14□□□□□ -0.31
VPREB3-201ENST00000248948 HNRNPA1L2Q32P51 320 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms