RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 RNFT2Q96EX2 444 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 SERAC1Q96JX3 654 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 MTMR9Q96QG7 549 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 APOL4Q9BPW4 351 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 UBA2Q9UBT2 640 aaPredicted RBP13.82□□□□□ -0.2
SF3A1-201ENST00000215793 ASTN2O75129 1339 aaPredicted RBP13.82□□□□□ -0.2
SF3A1-201ENST00000215793 ZBTB22O15209 634 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 RPN2P04844 631 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 HSMCR30P0CW71 290 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 KDELR1P24390 212 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 RBL1P28749 1068 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 NOS2P35228 1153 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 POLR2LP62875 67 aaKnown RBP13.82□□□□□ -0.2
SF3A1-201ENST00000215793 ACTRT2Q8TDY3 377 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 EPS8L1Q8TE68 723 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 POLR1EQ9GZS1 481 aaKnown RBP13.82□□□□□ -0.2
SF3A1-201ENST00000215793 PORCNQ9H237 461 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 RERGLQ9H628 205 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 ADPRHL2Q9NX46 363 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 KCNK4Q9NYG8 393 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 SORCS3Q9UPU3 1222 aa13.82□□□□□ -0.2
SF3A1-201ENST00000215793 TBKBP1A7MCY6 615 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 PCDH8O95206 1070 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 TNFAIP8O95379 198 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 ANXA6P08133 673 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 CACNA2D1P54289 1103 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 SNRNP27Q8WVK2 155 aaKnown RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 CEP44Q9C0F1 390 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 IL22Q9GZX6 179 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 TNPO3Q9Y5L0 923 aaKnown RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 A0A087X0B3 334 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 A0A087X1B8 175 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 FAM47E-STBD1D6RA91 191 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 PSMD12O00232 456 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 PSMB9P28065 219 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 BCL2L1Q07817 233 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 ALFQ53S48 1182 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 TLK2Q86UE8 772 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 WNT8BQ93098 351 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 UNKQ9C0B0 810 aaKnown RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 GTF2A1LQ9UNN4 478 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 SIK3Q9Y2K2 1263 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 NWD1Q149M9 1564 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 GAKO14976 1311 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 H3BMM5 538 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 ALDH9A1P49189 494 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 BOP1Q14137 746 aaKnown RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 CNGA2Q16280 664 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 OTUD3Q5T2D3 398 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 IQSEC1Q6DN90 963 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 TYW3Q6IPR3 259 aaKnown RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 NEPROQ6NW34 567 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 C1orf186Q6ZWK4 172 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 DSG4Q86SJ6 1040 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 SOCS4Q8WXH5 440 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 CHST7Q9NS84 486 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 RAD18Q9NS91 495 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 DUSP12Q9UNI6 340 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 TPRKBQ9Y3C4 175 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 MANSC4A6NHS7 340 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 SIGLEC16A6NMB1 481 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 WNT10BO00744 389 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 CHADO15335 359 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 FGF10O15520 208 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 RGS14O43566 566 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 SMNDC1O75940 238 aaKnown RBP eCLIP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 CYP2A6P11509 494 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 WEE1P30291 646 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 GPR15P49685 360 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 SLC45A4Q5BKX6 768 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 CASP12Q6UXS9 341 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 LPCAT2Q7L5N7 544 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 FAM228AQ86W67 206 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 LGI2Q8N0V4 545 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 TMEM132CQ8N3T6 1108 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 GDPD5Q8WTR4 605 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 MED8Q96G25 268 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 P2RX7Q99572 595 aaKnown RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 C9orf16Q9BUW7 83 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 TKTL2Q9H0I9 626 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 PIF1Q9H611 641 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 ABCC13Q9NSE7 274 aa13.81□□□□□ -0.2
SF3A1-201ENST00000215793 CEP170BQ9Y4F5 1589 aaPredicted RBP13.81□□□□□ -0.2
SF3A1-201ENST00000215793 F8VP50 259 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 BTN3A1O00481 513 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 DCXO43602 365 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 PEX1O43933 1283 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 MMP13P45452 471 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 SNX32Q86XE0 403 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 C19orf18Q8NEA5 215 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 OR6Y1Q8NGX8 325 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 ZFRQ96KR1 1074 aaKnown RBP13.8□□□□□ -0.2
SF3A1-201ENST00000215793 HSFY1Q96LI6 401 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 RAD21L1Q9H4I0 556 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 CDHR5Q9HBB8 845 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 THG1LQ9NWX6 298 aaKnown RBP13.8□□□□□ -0.2
SF3A1-201ENST00000215793 ARHGAP28Q9P2N2 729 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 LIMD1Q9UGP4 676 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 TRPV2Q9Y5S1 764 aa13.8□□□□□ -0.2
SF3A1-201ENST00000215793 CARNS1A5YM72 827 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms