RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MKS1Q9NXB0 559 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 GNEQ9Y223 722 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 MYL12BO14950 172 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PEX14O75381 377 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 THRBP10828 461 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PICALMQ13492 652 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 TNFAIP1Q13829 316 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 NEDD8Q15843 81 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 DRICH1Q6PGQ1 229 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF410Q86VK4 478 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 TBC1D19Q8N5T2 526 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 MSTO1Q9BUK6 570 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 DNAJC11Q9NVH1 559 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ZBTB21Q9ULJ3 1066 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 CCNT2O60583 730 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ATF4P18848 351 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 TPTEP56180 551 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 LHFPL3Q86UP9 236 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 RNF135Q8IUD6 432 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SETD6Q8TBK2 473 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 COPS7BQ9H9Q2 264 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 OLA1Q9NTK5 396 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SIK3Q9Y2K2 1263 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ST14Q9Y5Y6 855 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 IVNS1ABPQ9Y6Y0 642 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 EIF4BP23588 611 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SLC5A3P53794 718 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ATP6V0D1P61421 351 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 RELL1Q8IUW5 271 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SLITRK4Q8IW52 837 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF317Q96PQ6 595 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 RIT2Q99578 217 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 NGRNQ9NPE2 291 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 FAM49BQ9NUQ9 324 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 TRHDEQ9UKU6 1024 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 FIS1Q9Y3D6 152 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PI4K2BG5E9Z4 385 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 AKAP8O43823 692 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ITGB3P05106 788 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 POLD3Q15054 466 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SF3B3Q15393 1217 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 TAF12Q16514 161 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 GLRA4Q5JXX5 417 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 DDI2Q5TDH0 399 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SYDE2Q5VT97 1194 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 RASSF6Q6ZTQ3 369 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 STK32CQ86UX6 486 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PDSS2Q86YH6 399 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF560Q96MR9 790 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 MTG1Q9BT17 334 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SLC4A5Q9BY07 1137 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 MMP27Q9H306 513 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 NMRAL1Q9HBL8 299 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SH3BP4Q9P0V3 963 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 GMIPQ9P107 970 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 NUP50Q9UKX7 468 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PCDHA6Q9UN73 950 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PLCL2Q9UPR0 1127 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PCDHA8Q9Y5H6 950 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 NPHP3-ACAD11A0A0J9YXS1 232 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 TTC34A8MYJ7 566 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 CYP1A2P05177 515 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 POU5F1BQ06416 359 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 DUOXA2Q1HG44 320 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 MRNIPQ6NTE8 343 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 CASP12Q6UXS9 341 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ZDHHC17Q8IUH5 632 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 FAM47BQ8NA70 645 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 FAM149B1Q96BN6 582 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 CLPTM1LQ96KA5 538 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SLC39A3Q9BRY0 314 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 GDAP2Q9NXN4 497 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SUGT1Q9Y2Z0 365 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 GLI2P10070 1586 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 TADA2AO75478 443 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ATG7O95352 703 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 FYNP06241 537 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 NEK3P51956 506 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 THOP1P52888 689 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 FASTKQ14296 549 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PERM1Q5SV97 790 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 N4BP2L1Q5TBK1 243 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ZNF57Q68EA5 555 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PADI6Q6TGC4 694 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 SPOCD1Q6ZMY3 1216 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 KCNK18Q7Z418 384 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 KIF18BQ86Y91 864 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 PYDC1Q8WXC3 89 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 FAM120BQ96EK7 910 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ARL5BQ96KC2 179 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 MED15Q96RN5 788 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 RNPEPQ9H4A4 650 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 ADPRHL2Q9NX46 363 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 NPAP1Q9NZP6 1156 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 AAR2Q9Y312 384 aaKnown RBP4.76□□□□□ -1.65
SCN1A-220ENST00000641603 TTLL3Q9Y4R7 772 aa4.76□□□□□ -1.65
SCN1A-220ENST00000641603 K7ERI5 159 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 NEMP1O14524 444 aa4.75□□□□□ -1.65
SCN1A-220ENST00000641603 CYP2D6P10635 497 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms