RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MAVSQ7Z434 540 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 OSTM1Q86WC4 334 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 RASSF3Q86WH2 238 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 TOP6BLQ8N6T0 577 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 B3GALNT2Q8NCR0 500 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 OR6J1Q8NGC5 347 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 DTX3LQ8TDB6 740 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 OSMRQ99650 979 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 FAM49AQ9H0Q0 323 aaPredicted RBP13.1□□□□□ -0.31
LINC00540-203ENST00000631321 KRT82Q9NSB4 513 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 SLC7A8Q9UHI5 535 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 SOX13Q9UN79 622 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 RAD54BQ9Y620 910 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 TRIP11Q15643 1979 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 FAM163BP0C2L3 166 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 KCNA4P22459 653 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 AKAP5P24588 427 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 DCAF6Q58WW2 860 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 C6orf163Q5TEZ5 329 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 RFX8Q6ZV50 586 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 C10orf107Q8IVU9 208 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 PPFIBP2Q8ND30 876 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 NDRG1Q92597 394 aaKnown RBP13.1□□□□□ -0.31
LINC00540-203ENST00000631321 FAM149B1Q96BN6 582 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 CERS2Q96G23 380 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 SLC9A7Q96T83 725 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 THTPAQ9BU02 230 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 APOL6Q9BWW8 343 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 RNF19AQ9NV58 838 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 COPG2Q9UBF2 871 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 STAP1Q9ULZ2 295 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 GINS2Q9Y248 185 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 WASF2Q9Y6W5 498 aa13.1□□□□□ -0.31
LINC00540-203ENST00000631321 ZNF195O14628 629 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 NPR3P17342 541 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 GARSP41250 739 aaKnown RBP13.09□□□□□ -0.31
LINC00540-203ENST00000631321 CDK7P50613 346 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 AIF1P55008 147 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 PDE1BQ01064 536 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 SOX4Q06945 474 aaPredicted RBP13.09□□□□□ -0.31
LINC00540-203ENST00000631321 IFRD2Q12894 506 aaPredicted RBP13.09□□□□□ -0.31
LINC00540-203ENST00000631321 CCDC153Q494R4 210 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 TMCO4Q5TGY1 634 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 ATG14Q6ZNE5 492 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 WNT8BQ93098 351 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 PGBD4Q96DM1 585 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 GORASP1Q9BQQ3 440 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 APOBEC2Q9Y235 224 aaKnown RBP13.09□□□□□ -0.31
LINC00540-203ENST00000631321 SLC45A1Q9Y2W3 748 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 NRCAMQ92823 1304 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 A0A088AWK7 358 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 DPPA5A6NC42 116 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 MAP3K7O43318 606 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 HUS1O60921 280 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 SKAP2O75563 359 aaPredicted RBP13.09□□□□□ -0.31
LINC00540-203ENST00000631321 PDHA1P08559 390 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 C6orf222P0C671 652 aaPredicted RBP13.09□□□□□ -0.31
LINC00540-203ENST00000631321 ERVK-10P10266 1014 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 ANPEPP15144 967 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 IDH3AP50213 366 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 ABCE1P61221 599 aaKnown RBP13.09□□□□□ -0.31
LINC00540-203ENST00000631321 SCAPQ12770 1279 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 SEMA3BQ13214 749 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 UBXN11Q5T124 520 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 IQSEC1Q6DN90 963 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 PAQR9Q6ZVX9 377 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 CCNYQ8ND76 341 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 PPP4R1Q8TF05 950 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 NTAN1Q96AB6 310 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 CLPTM1LQ96KA5 538 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 FCRL3Q96P31 734 aaPredicted RBP13.09□□□□□ -0.31
LINC00540-203ENST00000631321 LRRC40Q9H9A6 602 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 TMPRSS4Q9NRS4 437 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 PIH1D1Q9NWS0 290 aaKnown RBP13.09□□□□□ -0.31
LINC00540-203ENST00000631321 DDX43Q9NXZ2 648 aaKnown RBP13.09□□□□□ -0.31
LINC00540-203ENST00000631321 TMEM216Q9P0N5 145 aa13.09□□□□□ -0.31
LINC00540-203ENST00000631321 KAT6AQ92794 2004 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 M0QYT0 321 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 EEF2KO00418 725 aaKnown RBP13.08□□□□□ -0.32
LINC00540-203ENST00000631321 SIN3BO75182 1162 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 AP2A1O95782 977 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 SMIM10L2AP0DMW4 78 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 SMIM10L2BP0DMW5 78 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 MX2P20592 715 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 PTPN3P26045 913 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 TYK2P29597 1187 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 ARRB2P32121 409 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 MLH1P40692 756 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 HCAR3P49019 387 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 LILRA4P59901 499 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 BTKQ06187 659 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 PPM1JQ5JR12 505 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 ADGRG6Q86SQ4 1221 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 TMEM135Q86UB9 458 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 KBTBD2Q8IY47 623 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 ZC3H15Q8WU90 426 aaKnown RBP13.08□□□□□ -0.32
LINC00540-203ENST00000631321 ZNF184Q99676 751 aaPredicted RBP13.08□□□□□ -0.32
LINC00540-203ENST00000631321 RBBP8Q99708 897 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 CEP41Q9BYV8 373 aa13.08□□□□□ -0.32
LINC00540-203ENST00000631321 RNF39Q9H2S5 420 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms