RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CHST9Q7L1S5 443 aa21.39■■□□□ 1.01
CLN3-240ENST00000631023 KIAA0907Q7Z7F0 614 aaPredicted RBP21.39■■□□□ 1.01
CLN3-240ENST00000631023 LONP2Q86WA8 852 aa21.39■■□□□ 1.01
CLN3-240ENST00000631023 FAM172AQ8WUF8 416 aa21.39■■□□□ 1.01
CLN3-240ENST00000631023 HHIPQ96QV1 700 aa21.39■■□□□ 1.01
CLN3-240ENST00000631023 ZDHHC4Q9NPG8 344 aa21.39■■□□□ 1.01
CLN3-240ENST00000631023 POLR3BQ9NW08 1133 aaPredicted RBP21.39■■□□□ 1.01
CLN3-240ENST00000631023 CNOT8Q9UFF9 292 aaKnown RBP21.39■■□□□ 1.01
CLN3-240ENST00000631023 A0A1B0GVM2 712 aa21.38■■□□□ 1.01
CLN3-240ENST00000631023 TCAF2A6NFQ2 919 aa21.38■■□□□ 1.01
CLN3-240ENST00000631023 FNTBP49356 437 aa21.38■■□□□ 1.01
CLN3-240ENST00000631023 OXCT1P55809 520 aa21.38■■□□□ 1.01
CLN3-240ENST00000631023 ZNF653Q96CK0 615 aa21.38■■□□□ 1.01
CLN3-240ENST00000631023 CNPY3Q9BT09 278 aa21.38■■□□□ 1.01
CLN3-240ENST00000631023 MRPL47Q9HD33 250 aaKnown RBP21.38■■□□□ 1.01
CLN3-240ENST00000631023 KIAA1522Q9P206 1035 aaPredicted RBP21.38■■□□□ 1.01
CLN3-240ENST00000631023 ARHGAP20Q9P2F6 1191 aa21.38■■□□□ 1.01
CLN3-240ENST00000631023 HCN2Q9UL51 889 aa21.38■■□□□ 1.01
CLN3-240ENST00000631023 PLA2G4CQ9UP65 541 aa21.38■■□□□ 1.01
CLN3-240ENST00000631023 SCINQ9Y6U3 715 aa21.38■■□□□ 1.01
CLN3-240ENST00000631023 CKAP5Q14008 2032 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 PROB1E7EW31 1015 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 ZBTB24O43167 697 aaPredicted RBP21.37■■□□□ 1.01
CLN3-240ENST00000631023 AP5Z1O43299 807 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 ADAM23O75077 832 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 MOCS3O95396 460 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 ATP5BP06576 529 aaKnown RBP21.37■■□□□ 1.01
CLN3-240ENST00000631023 HOXB2P14652 356 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 POLR2EP19388 210 aaKnown RBP21.37■■□□□ 1.01
CLN3-240ENST00000631023 CNR2P34972 360 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 ARID5BQ14865 1188 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 SH3PXD2AQ5TCZ1 1133 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 TMC6Q7Z403 805 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 WDR5BQ86VZ2 330 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 GAS2L3Q86XJ1 694 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 CNGA4Q8IV77 575 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 CCAR2Q8N163 923 aaKnown RBP21.37■■□□□ 1.01
CLN3-240ENST00000631023 WFDC5Q8TCV5 224 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 PPP1R9BQ96SB3 815 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 ANLNQ9NQW6 1124 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 THAP10Q9P2Z0 257 aaPredicted RBP21.37■■□□□ 1.01
CLN3-240ENST00000631023 EBF1Q9UH73 591 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 SDK1Q7Z5N4 2213 aa21.37■■□□□ 1.01
CLN3-240ENST00000631023 A0A087X0T9 212 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 LILRB5O75023 590 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 FAM228BP0C875 321 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 CD70P32970 193 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 ADRA1BP35368 520 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 EIF4A3P38919 411 aaKnown RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 WASP42768 502 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 ADKP55263 362 aaKnown RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 HDAC4P56524 1084 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 LMAN2Q12907 356 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 C5orf22Q49AR2 442 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 TMEM215Q68D42 235 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 MBLAC2Q68D91 279 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 ALKBH5Q6P6C2 394 aaKnown RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 TMEM92Q6UXU6 159 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 ADIPOR2Q86V24 386 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 NKD2Q969F2 451 aaPredicted RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 IGSF8Q969P0 613 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 ACOX2Q99424 681 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 DEF6Q9H4E7 631 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 ABHD10Q9NUJ1 306 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 RIF1Q5UIP0 2472 aaKnown RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 PIEZO1Q92508 2521 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 AKR1B15C9JRZ8 316 aaPredicted RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 I6L893 689 aaPredicted RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 AXIN1O15169 862 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 ATMINO43313 823 aaPredicted RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 MFAP3LO75121 409 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 CLDN11O75508 207 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 PXNP49023 591 aaPredicted RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 DMWDQ09019 674 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 ZNF177Q13360 481 aaPredicted RBP21.36■■□□□ 1.01
CLN3-240ENST00000631023 SLC12A1Q13621 1099 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 FSCBQ5H9T9 825 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 CCDC122Q5T0U0 273 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 C14orf80Q86SX3 495 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 DNAAF5Q86Y56 855 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 LMLNQ96KR4 655 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 GABRG3Q99928 467 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 CACNA2D2Q9NY47 1150 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 MYO1AQ9UBC5 1043 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 STON1Q9Y6Q2 735 aa21.36■■□□□ 1.01
CLN3-240ENST00000631023 SSU72P8A0A1W2PR75 194 aa21.35■■□□□ 1.01
CLN3-240ENST00000631023 CCP110O43303 1012 aa21.35■■□□□ 1.01
CLN3-240ENST00000631023 GGCXP38435 758 aa21.35■■□□□ 1.01
CLN3-240ENST00000631023 CDH4P55283 916 aa21.35■■□□□ 1.01
CLN3-240ENST00000631023 TBX2Q13207 712 aaPredicted RBP21.35■■□□□ 1.01
CLN3-240ENST00000631023 ZNF234Q14588 700 aa21.35■■□□□ 1.01
CLN3-240ENST00000631023 SORCS1Q8WY21 1168 aa21.35■■□□□ 1.01
CLN3-240ENST00000631023 MRFAP1L1Q96HT8 127 aa21.35■■□□□ 1.01
CLN3-240ENST00000631023 PHOX2BQ99453 314 aa21.35■■□□□ 1.01
CLN3-240ENST00000631023 TMPRSS4Q9NRS4 437 aa21.35■■□□□ 1.01
CLN3-240ENST00000631023 RALGAPA1Q6GYQ0 2036 aa21.35■■□□□ 1.01
CLN3-240ENST00000631023 TMEM191CA6NGB0 347 aa21.34■■□□□ 1.01
CLN3-240ENST00000631023 E9PAM4 449 aa21.34■■□□□ 1.01
CLN3-240ENST00000631023 SRGAP2O75044 1071 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms