RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 ANKRD63C9JTQ0 380 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 MAP2K7O14733 419 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 TBX1O43435 398 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 SLC26A4O43511 780 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 HCRTO43612 131 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 TSPAN6O43657 245 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 LRP3O75074 770 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 SIN3BO75182 1162 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 DNAJC8O75937 253 aaPredicted RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 KCNK5O95279 499 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 MUTP22033 750 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 TAF6P49848 677 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 KLK7P49862 253 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 DMC1Q14565 340 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 FSTL4Q6MZW2 842 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 C1orf228Q6PIY5 440 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 CCDC170Q8IYT3 715 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 ARL14EPQ8N8R7 260 aaPredicted RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 CHAC2Q8WUX2 184 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 EIF3CQ99613 913 aaKnown RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 P2RY13Q9BPV8 354 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 C17orf75Q9HAS0 396 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 PARVGQ9HBI0 331 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 TRPV5Q9NQA5 729 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 HPS4Q9NQG7 708 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 DUS2Q9NX74 493 aaKnown RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 DPP3Q9NY33 737 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 BCCIPQ9P287 314 aaKnown RBP eCLIP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 TRIM10Q9UDY6 481 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 SLC6A14Q9UN76 642 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 GCN1Q92616 2671 aaKnown RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 PLD2O14939 933 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 ATG13O75143 517 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 ZNF806P0C7X5 589 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 IDEP14735 1019 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 LRPAP1P30533 357 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 POLR2BP30876 1174 aaKnown RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 LRRC63Q05C16 580 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 ZC3H12BQ5HYM0 836 aaKnown RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 WIPI1Q5MNZ9 446 aaPredicted RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 PAPD7Q5XG87 772 aaKnown RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 EFCAB13Q8IY85 973 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 SYT2Q8N9I0 419 aaPredicted RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 HPS3Q969F9 1004 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 DNAJC19Q96DA6 116 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 BORCS6Q96GS4 357 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 SLC22A12Q96S37 553 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 PNKPQ96T60 521 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 FAM213AQ9BRX8 229 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 LINC00597Q9H2U6 94 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 PLEKHA5Q9HAU0 1116 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 TMLHEQ9NVH6 421 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 AGO2Q9UKV8 859 aaKnown RBP5.09□□□□□ -1.59
LINC00550-201ENST00000629293 AGAP1Q9UPQ3 857 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 SNX9Q9Y5X1 595 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 SCN1AP35498 2009 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 AHCTF1Q8WYP5 2266 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 NBASA2RRP1 2371 aa5.09□□□□□ -1.59
LINC00550-201ENST00000629293 ATXN2Q99700 1313 aaKnown RBP5.09□□□□□ -1.6
LINC00550-201ENST00000629293 IGSF10Q6WRI0 2623 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 ADARB2-AS1A8MUL3 147 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 HUS1O60921 280 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 LCA5LO95447 670 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 BPNT1O95861 308 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 DLGAP3O95886 979 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 ITGB3P05106 788 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 CFIP05156 583 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 TYMPP19971 482 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 GJA4P35212 333 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 ATXN3P54252 364 aaPredicted RBP5.09□□□□□ -1.6
LINC00550-201ENST00000629293 PSMC1P62191 440 aaKnown RBP5.09□□□□□ -1.6
LINC00550-201ENST00000629293 MYBPC2Q14324 1141 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 PLK5Q496M5 336 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 FNDC3BQ53EP0 1204 aaKnown RBP5.09□□□□□ -1.6
LINC00550-201ENST00000629293 DAB2IPQ5VWQ8 1189 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 WDR5BQ86VZ2 330 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 ZC3H3Q8IXZ2 948 aaKnown RBP5.09□□□□□ -1.6
LINC00550-201ENST00000629293 DCP1BQ8IZD4 617 aaKnown RBP5.09□□□□□ -1.6
LINC00550-201ENST00000629293 SYCP3Q8IZU3 236 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 DEFB124Q8NES8 71 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 RIN3Q8TB24 985 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 GTPBP2Q9BX10 602 aaKnown RBP5.09□□□□□ -1.6
LINC00550-201ENST00000629293 LGR4Q9BXB1 951 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 PCIF1Q9H4Z3 704 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 ARFGAP3Q9NP61 516 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 SLC39A2Q9NP94 309 aa5.09□□□□□ -1.6
LINC00550-201ENST00000629293 ZNF638Q14966 1978 aaKnown RBP5.08□□□□□ -1.6
LINC00550-201ENST00000629293 NBEAQ8NFP9 2946 aa5.08□□□□□ -1.6
LINC00550-201ENST00000629293 SPTAN1Q13813 2472 aaKnown RBP5.08□□□□□ -1.6
LINC00550-201ENST00000629293 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.08□□□□□ -1.6
LINC00550-201ENST00000629293 LNP1A1A4G5 178 aa5.08□□□□□ -1.6
LINC00550-201ENST00000629293 KPNA7A9QM74 516 aa5.08□□□□□ -1.6
LINC00550-201ENST00000629293 H0YCG3 227 aa5.08□□□□□ -1.6
LINC00550-201ENST00000629293 HDCP19113 662 aa5.08□□□□□ -1.6
LINC00550-201ENST00000629293 WASP42768 502 aa5.08□□□□□ -1.6
LINC00550-201ENST00000629293 MTIF2P46199 727 aaKnown RBP5.08□□□□□ -1.6
LINC00550-201ENST00000629293 SLC12A3P55017 1021 aa5.08□□□□□ -1.6
LINC00550-201ENST00000629293 KRT83P78385 493 aa5.08□□□□□ -1.6
LINC00550-201ENST00000629293 IRX4P78413 519 aa5.08□□□□□ -1.6
LINC00550-201ENST00000629293 MAN2A1Q16706 1144 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms