RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 PDLIM4P50479 330 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 RASSF2P50749 326 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 FAM193AP78312 1265 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 DSC1Q08554 894 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 PMPCAQ10713 525 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 COASYQ13057 564 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 FAM76BQ5HYJ3 339 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 DNTTIP2Q5QJE6 756 aaKnown RBP3.31□□□□□ -1.88
SCN1A-208ENST00000625916 FNBP1LQ5T0N5 605 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 MRNIPQ6NTE8 343 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 SRFBP1Q8NEF9 429 aaKnown RBP3.31□□□□□ -1.88
SCN1A-208ENST00000625916 GABPB2Q8TAK5 448 aaPredicted RBP3.31□□□□□ -1.88
SCN1A-208ENST00000625916 KAT2AQ92830 837 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 GRAMD1AQ96CP6 724 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 MAGEH1Q9H213 219 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 FBXO28Q9NVF7 368 aa3.31□□□□□ -1.88
SCN1A-208ENST00000625916 DDX20Q9UHI6 824 aaKnown RBP3.31□□□□□ -1.88
SCN1A-208ENST00000625916 CLEC18AA5D8T8 446 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 M0QZQ0 153 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 TPP1O14773 563 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 ZBED1O96006 694 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 GLUD1P00367 558 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 LCATP04180 440 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 FCGR1AP12314 374 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 MST1P26927 711 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 SLC5A2P31639 672 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 GLUD2P49448 558 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 SLC37A1P57057 533 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 ABATP80404 500 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 TRAF1Q13077 416 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 GALNT3Q14435 633 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 ALG10Q5BKT4 473 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 ALG10BQ5I7T1 473 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 ENTPD8Q5MY95 495 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 FAM102BQ5T8I3 360 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 C9orf57Q5W0N0 161 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 C16orf89Q6UX73 402 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 PIK3AP1Q6ZUJ8 805 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 CREB3L2Q70SY1 520 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 C16orf82Q7Z2V1 217 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 KDELC2Q7Z4H8 507 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 CCDC28AQ8IWP9 274 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 PAQR4Q8N4S7 273 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-208ENST00000625916 CLEC18CQ8NCF0 446 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 CCDC150Q8NCX0 1101 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 STAG1Q8WVM7 1258 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 UNKQ9C0B0 810 aaKnown RBP3.3□□□□□ -1.88
SCN1A-208ENST00000625916 RETREG1Q9H6L5 497 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 CATSPERBQ9H7T0 1116 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 PNPLA8Q9NP80 782 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 PLEKHB1Q9UF11 243 aaPredicted RBP3.3□□□□□ -1.88
SCN1A-208ENST00000625916 KCNG2Q9UJ96 466 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 TNFSF13BQ9Y275 285 aa3.3□□□□□ -1.88
SCN1A-208ENST00000625916 SCN5AQ14524 2016 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 PLSCR5A0PG75 271 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 CXorf65A6NEN9 183 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 MSI1O43347 362 aaKnown RBP3.29□□□□□ -1.88
SCN1A-208ENST00000625916 ZBTB11O95625 1053 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-208ENST00000625916 CGAP01215 116 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 HRGP04196 525 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 RFX5P48382 616 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-208ENST00000625916 ZNF718Q3SXZ3 478 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 DCAF12L2Q5VW00 463 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 USP17L6PQ6QN14 398 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 ARMC9Q7Z3E5 817 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 ADPRHL1Q8NDY3 354 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 ADAMTS14Q8WXS8 1223 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 INPP4AQ96PE3 977 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-208ENST00000625916 MAGEB5Q9BZ81 275 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 BTBD1Q9H0C5 482 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 PCDHB7Q9Y5E2 793 aa3.29□□□□□ -1.88
SCN1A-208ENST00000625916 A0A0B4J293 547 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 AREL1O15033 823 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 KCNQ3O43525 872 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 KAT7O95251 611 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 PPP1R3DO95685 299 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 IDEP14735 1019 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 POU3F1Q03052 451 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-208ENST00000625916 EEF1A2Q05639 463 aaKnown RBP3.28□□□□□ -1.88
SCN1A-208ENST00000625916 KIF5AQ12840 1032 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 TRAF2Q12933 501 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 ATP1A4Q13733 1029 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 DAG1Q14118 895 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 C10orf76Q5T2E6 689 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 WDR93Q6P2C0 686 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.28□□□□□ -1.88
SCN1A-208ENST00000625916 H1FNTQ75WM6 255 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-208ENST00000625916 CAMK1DQ8IU85 385 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 ENGASEQ8NFI3 743 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 RTP4Q96DX8 246 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 C1QTNF4Q9BXJ3 329 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-208ENST00000625916 ZMYND8Q9ULU4 1186 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-208ENST00000625916 CORO2BQ9UQ03 480 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 UBE2J1Q9Y385 318 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-208ENST00000625916 PCDHGB6Q9Y5F9 930 aa3.28□□□□□ -1.88
SCN1A-208ENST00000625916 CKAP5Q14008 2032 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 SRRM3A6NNA2 597 aaPredicted RBP3.27□□□□□ -1.89
SCN1A-208ENST00000625916 CLCA1A8K7I4 914 aa3.27□□□□□ -1.89
SCN1A-208ENST00000625916 NPC1O15118 1278 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 130.1 ms