RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 TAS2R13Q9NYV9 303 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 DNAJC16Q9Y2G8 782 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 CPA3P15088 417 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 ATAD3BQ5T9A4 648 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 RAET1GQ6H3X3 334 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 MAGEC3Q8TD91 643 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 PHF21BQ96EK2 531 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 BBS4Q96RK4 519 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 RHBGQ9H310 441 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 PHTF1Q9UMS5 762 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 GLTPD2A6NH11 291 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 SNTNA6NMZ2 147 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 TMEM114B3SHH9 223 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 FGF10O15520 208 aaPredicted RBP11.62□□□□□ -0.55
CLIP1-219ENST00000620786 TOMM70O94826 608 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 FYNP06241 537 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 NPR3P17342 541 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 TRIP10Q15642 601 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 CYP2A13Q16696 494 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 GSTA3Q16772 222 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 TRPM8Q7Z2W7 1104 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 UNC93AQ86WB7 457 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 FBXO39Q8N4B4 442 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 MDM1Q8TC05 714 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 PCDH9Q9HC56 1237 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 NCKIPSDQ9NZQ3 722 aa11.62□□□□□ -0.55
CLIP1-219ENST00000620786 A0A088AWK7 358 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 TISP43B9A030 160 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 EIF3HO15372 352 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ZBTB14O43829 449 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 GLUD1P00367 558 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ALBP02768 609 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 SPATA31D3P0C874 917 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ZNF10P21506 573 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 RHBDL3P58872 404 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 GRIK3Q13003 919 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ZC3H12AQ5D1E8 599 aaKnown RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 FIGNQ5HY92 759 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ZNF470Q6ECI4 717 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 DCLRE1AQ6PJP8 1040 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 CCDC81Q6ZN84 652 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 SPATA31D4Q6ZUB0 917 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 PDLIM2Q96JY6 352 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ZNHIT2Q9UHR6 403 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 UBIAD1Q9Y5Z9 338 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 USP1O94782 785 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ENO2P09104 434 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 CHKAP35790 457 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 MRPL28Q13084 256 aaKnown RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 NOA1Q8NC60 698 aaKnown RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ACTRT1Q8TDG2 376 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ANKRD49Q8WVL7 239 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 PARVBQ9HBI1 364 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 NMRAL1Q9HBL8 299 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 SHOC2Q9UQ13 582 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 GIT1Q9Y2X7 761 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 CAPN6Q9Y6Q1 641 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 THRAP10827 490 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ITGA7Q13683 1181 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 TRIP4Q15650 581 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 GET4Q7L5D6 327 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 DNAJC1Q96KC8 554 aaKnown RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 PABPC3Q9H361 631 aaKnown RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 KLHL28Q9NXS3 571 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ZNF229Q9UJW7 825 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 SOX13Q9UN79 622 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 NT5C1B-RDH14C9J2C7 533 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 PRR23D1E9PI22 279 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 PIK3CDO00329 1044 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 TPST1O60507 370 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 PRR23D2P0DMB1 279 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 NOS2P35228 1153 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 GPR1P46091 355 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 FOXR1Q6PIV2 292 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 VCPIP1Q96JH7 1222 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ACO2Q99798 780 aaKnown RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 DPY30Q9C005 99 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 CATSPERZQ9NTU4 200 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 POLG2Q9UHN1 485 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ZMYM5Q9UJ78 669 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 PPLO60437 1756 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 ZNF541Q9H0D2 1346 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 RIC1Q4ADV7 1423 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 WTIPA6NIX2 430 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 RPL9P32969 192 aaKnown RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 CLK2P49760 499 aaKnown RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 MAD2L1Q13257 205 aaPredicted RBP11.61□□□□□ -0.55
CLIP1-219ENST00000620786 E2F4Q16254 413 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 PDPK2PQ6A1A2 396 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 WNT8BQ93098 351 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 CXorf40BQ96DE9 158 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 CAPNS2Q96L46 248 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 TLE6Q9H808 572 aa11.61□□□□□ -0.55
CLIP1-219ENST00000620786 KCNK1O00180 336 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 IGF2BP3O00425 579 aaKnown RBP eCLIP11.6□□□□□ -0.55
CLIP1-219ENST00000620786 VAPBO95292 243 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 GJB6O95452 261 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 IL1BP01584 269 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 POU1F1P28069 291 aa11.6□□□□□ -0.55
CLIP1-219ENST00000620786 MIPP30301 263 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms