RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 KCTD13Q8WZ19 329 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 CPT1BQ92523 772 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 SCYL1Q96KG9 808 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 AGTP01019 485 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 MGAT1P26572 445 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 IL9RQ01113 521 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 EFTUD2Q15029 972 aaKnown RBP eCLIP16.15■□□□□ 0.183e-7■■■■■ 29.2
CPSF1-213ENST00000620219 GKAP1Q5VSY0 366 aaPredicted RBP16.15■□□□□ 0.18
CPSF1-213ENST00000620219 FBXO46Q6PJ61 603 aaPredicted RBP16.15■□□□□ 0.18
CPSF1-213ENST00000620219 TAS1R1Q7RTX1 841 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 SLC35B2Q8TB61 432 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 CORO1BQ9BR76 489 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 FOXP3Q9BZS1 431 aa16.15■□□□□ 0.18
CPSF1-213ENST00000620219 WEE1P30291 646 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 DEFB103AP81534 67 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 XKR4Q5GH76 650 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 HECTD3Q5T447 861 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 TMEM173Q86WV6 379 aaPredicted RBP16.14■□□□□ 0.17
CPSF1-213ENST00000620219 CACNA2D3Q8IZS8 1091 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 NPY6RQ99463 290 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 CCSER2Q9H7U1 834 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 CNOT10Q9H9A5 744 aaKnown RBP16.14■□□□□ 0.17
CPSF1-213ENST00000620219 HAUS2Q9NVX0 235 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 PSD3Q9NYI0 1048 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 FBXW11Q9UKB1 542 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 B4GALT3O60512 393 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 DPYSL2Q16555 572 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 RASSF3Q86WH2 238 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 DDI1Q8WTU0 396 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 KLHL5Q96PQ7 755 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 EFR3BQ9Y2G0 817 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 SLC4A7Q9Y6M7 1214 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 WDR27A2RRH5 827 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 RAMP2O60895 175 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 FAAP100Q0VG06 881 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 BMPR2Q13873 1038 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 POU6F1Q14863 301 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 LINC01599Q8WXQ3 324 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 NMUR1Q9HB89 426 aa16.14■□□□□ 0.17
CPSF1-213ENST00000620219 IPO11Q9UI26 975 aaKnown RBP16.14■□□□□ 0.17
CPSF1-213ENST00000620219 LSM7Q9UK45 103 aaKnown RBP16.14■□□□□ 0.17
CPSF1-213ENST00000620219 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-213ENST00000620219 A6NNZ2 444 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 DPYSL4O14531 572 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 COPEO14579 308 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 ZNF177Q13360 481 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-213ENST00000620219 TUBB8Q3ZCM7 444 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 TPGS1Q6ZTW0 290 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 TP53INP2Q8IXH6 220 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 PQLC3Q8N755 202 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 PLK2Q9NYY3 685 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 A0A0A0MRY4 1105 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 MTMR11A4FU01 709 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 KRT38O76015 456 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 HDCP19113 662 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 NFKB1P19838 968 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 PAX3P23760 479 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 CDH18Q13634 790 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 ZNF598Q86UK7 904 aaKnown RBP16.13■□□□□ 0.17
CPSF1-213ENST00000620219 OR52K1Q8NGK4 314 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 SPATA13Q96N96 652 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 PAFAH2Q99487 392 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 GKN1Q9NS71 199 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 PSMC3IPQ9P2W1 217 aaPredicted RBP16.13■□□□□ 0.17
CPSF1-213ENST00000620219 TCRBV5S1A1TA0A578 114 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 H0YGN5 161 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 PARNO95453 639 aaKnown RBP16.13■□□□□ 0.17
CPSF1-213ENST00000620219 FDFT1P37268 417 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 ABCG1P45844 678 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 TWF1Q12792 350 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 ANO4Q32M45 955 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 EFHBQ8N7U6 833 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 XPO6Q96QU8 1125 aaKnown RBP16.13■□□□□ 0.17
CPSF1-213ENST00000620219 APOL5Q9BWW9 433 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 EPN3Q9H201 632 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 SAGE1Q9NXZ1 904 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 NFS1Q9Y697 457 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 TMPRSS15P98073 1019 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 TRIM71Q2Q1W2 868 aaKnown RBP16.13■□□□□ 0.17
CPSF1-213ENST00000620219 PKDCCQ504Y2 493 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 FNBP1LQ5T0N5 605 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 FICDQ9BVA6 458 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 XAB2Q9HCS7 855 aaKnown RBP16.13■□□□□ 0.17
CPSF1-213ENST00000620219 TMEM30AQ9NV96 361 aa16.13■□□□□ 0.17
CPSF1-213ENST00000620219 RRP15Q9Y3B9 282 aaKnown RBP16.13■□□□□ 0.17
CPSF1-213ENST00000620219 CCDC195A0A1B0GUA6 201 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 TCP11X1B4DZS4 312 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 KRT4P19013 534 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 POLD3Q15054 466 aaPredicted RBP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 ZNF473Q8WTR7 871 aaKnown RBP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 SEC14L1Q92503 715 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 C20orf96Q9NUD7 363 aaPredicted RBP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 MTSS1O43312 755 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 TMEM63AO94886 807 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 GJA1P17302 382 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 GABRR2P28476 465 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 GEMIN4P57678 1058 aaKnown RBP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 USP46P62068 366 aa16.12■□□□□ 0.17
CPSF1-213ENST00000620219 SMAD3P84022 425 aaKnown RBP16.12■□□□□ 0.17
CPSF1-213ENST00000620219 OASLQ15646 514 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms