RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TRUB2O95900 331 aaKnown RBP7.89□□□□□ -1.15
CUX1-219ENST00000606749 MOCS2O96007 188 aaPredicted RBP7.89□□□□□ -1.15
CUX1-219ENST00000606749 IGLV3-25P01717 112 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 DNTTP04053 509 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 ASLP04424 464 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 ZNF883P0CG24 379 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 ATXN8OSP0DMR3 200 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 PON1P27169 355 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 GNA15P30679 374 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 USP8P40818 1118 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 CSKP41240 450 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 MATKP42679 507 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 AFF3P51826 1226 aaKnown RBP7.89□□□□□ -1.15
CUX1-219ENST00000606749 ST8SIA6P61647 398 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 PITX1P78337 314 aaPredicted RBP7.89□□□□□ -1.15
CUX1-219ENST00000606749 APBA1Q02410 837 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 ARID5BQ14865 1188 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 TAF5Q15542 800 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 ARHGAP44Q17R89 818 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 ZNF423Q2M1K9 1284 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 HLA-BQ31612 363 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 HNRNPA1L2Q32P51 320 aaKnown RBP7.89□□□□□ -1.15
CUX1-219ENST00000606749 DCAF6Q58WW2 860 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 C9orf64Q5T6V5 341 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 IL27RAQ6UWB1 636 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 GBP6Q6ZN66 633 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 DBX2Q6ZNG2 339 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 MMS22LQ6ZRQ5 1243 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 NAXDQ8IW45 347 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 CCDC117Q8IWD4 279 aaPredicted RBP7.89□□□□□ -1.15
CUX1-219ENST00000606749 LGI2Q8N0V4 545 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 CHCHD4Q8N4Q1 142 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 KDM1BQ8NB78 822 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 SNX19Q92543 992 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 BIRC7Q96CA5 298 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 BTN2A3PQ96KV6 586 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 MRGPRX3Q96LB0 322 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 FAM81BQ96LP2 452 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 BTBD1Q9H0C5 482 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 SGK2Q9HBY8 427 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 OSGEPQ9NPF4 335 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 KIAA1522Q9P206 1035 aaPredicted RBP7.89□□□□□ -1.15
CUX1-219ENST00000606749 TJP2Q9UDY2 1190 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 SLCO3A1Q9UIG8 710 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 KLK13Q9UKR3 277 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 SCML1Q9UN30 329 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 ERVW-1Q9UQF0 538 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 ZBTB32Q9Y2Y4 487 aaPredicted RBP7.89□□□□□ -1.15
CUX1-219ENST00000606749 MSRB2Q9Y3D2 182 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 PCDHB9Q9Y5E1 797 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 SLCO1B1Q9Y6L6 691 aa7.89□□□□□ -1.15
CUX1-219ENST00000606749 MAP1BP46821 2468 aaKnown RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 TARSL2A2RTX5 802 aaKnown RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 GTPBP10A4D1E9 387 aaKnown RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 TMEM8BA6NDV4 472 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 TTC34A8MYJ7 566 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 KCNU1A8MYU2 1149 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 SIN3BO75182 1162 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 MOCS3O95396 460 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 CER1O95813 267 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 APOEP02649 317 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 GLI1P08151 1106 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 SRPRAP08240 638 aaKnown RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 TACR2P21452 398 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 CD27P26842 260 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 CTSOP43234 321 aaPredicted RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 UBE2HP62256 183 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 ECT2LQ008S8 904 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 PDCLQ13371 301 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 CDH18Q13634 790 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 EXOC3L4Q17RC7 722 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 KIF19Q2TAC6 998 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 PITRM1Q5JRX3 1037 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 KCNT1Q5JUK3 1230 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 EFHC1Q5JVL4 640 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 RAP1GAP2Q684P5 730 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 ZNF776Q68DI1 518 aaPredicted RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 USP30Q70CQ3 517 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 RAB44Q7Z6P3 723 aaPredicted RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 GLRX5Q86SX6 157 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 SLCO6A1Q86UG4 719 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 DHX40Q8IX18 779 aaKnown RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 APCDD1Q8J025 514 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 DEFB106AQ8N104 65 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 ATP6V0D2Q8N8Y2 350 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 MLKLQ8NB16 471 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 GANCQ8TET4 914 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 SETD7Q8WTS6 366 aaKnown RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 SHC3Q92529 594 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 PPP1R13BQ96KQ4 1090 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 SLC2A13Q96QE2 648 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 CPXM1Q96SM3 734 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 FAM129BQ96TA1 746 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 PRMT1Q99873 361 aaKnown RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 ORAI3Q9BRQ5 295 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 NEUROG2Q9H2A3 272 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 PABPC3Q9H361 631 aaKnown RBP7.88□□□□□ -1.15
CUX1-219ENST00000606749 TM9SF3Q9HD45 589 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 TM7SF3Q9NS93 570 aa7.88□□□□□ -1.15
CUX1-219ENST00000606749 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms