RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 IFNKQ9P0W0 207 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 PAXBP1Q9Y5B6 917 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 STON1Q9Y6Q2 735 aa16.68■□□□□ 0.26
TRIM28-213ENST00000598355 IGLV3-10A0A075B6K4 115 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 TCRBV21S2A2A0A5A6 115 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 GYPCP04921 128 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 P2RY2P41231 377 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 IRAK1P51617 712 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 ATXN1P54253 815 aaKnown RBP16.67■□□□□ 0.26
TRIM28-213ENST00000598355 AUHQ13825 339 aaKnown RBP16.67■□□□□ 0.26
TRIM28-213ENST00000598355 FSCBQ5H9T9 825 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 ACBD5Q5T8D3 534 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-213ENST00000598355 HGSNATQ68CP4 663 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 ACAD10Q6JQN1 1059 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 CXorf57Q6NSI4 855 aaKnown RBP16.67■□□□□ 0.26
TRIM28-213ENST00000598355 STRADAQ7RTN6 431 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 MCOLN2Q8IZK6 566 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 CFAP52Q8N1V2 620 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 RXFP2Q8WXD0 754 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 SORCS1Q8WY21 1168 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 IGSF8Q969P0 613 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 TTC17Q96AE7 1141 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 MYO19Q96H55 970 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 TPSD1Q9BZJ3 242 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 TKTL2Q9H0I9 626 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 HAUS4Q9H6D7 363 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 WDCPQ9H6R7 721 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 TAS2R14Q9NYV8 317 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 CAPN11Q9UMQ6 739 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 PI4KAP42356 2102 aa16.67■□□□□ 0.26
TRIM28-213ENST00000598355 SPTBN4Q9H254 2564 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 SIGLEC16A6NMB1 481 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 WASH3PC4AMC7 463 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 DDX3XO00571 662 aaKnown RBP eCLIP16.66■□□□□ 0.26
TRIM28-213ENST00000598355 GJB6O95452 261 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 DLDP09622 509 aaKnown RBP16.66■□□□□ 0.26
TRIM28-213ENST00000598355 GZMAP12544 262 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 NDUFV2P19404 249 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 TGM1P22735 817 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 PRKCHP24723 683 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 WASP42768 502 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 CDH18Q13634 790 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 PLK5Q496M5 336 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 CCDC14Q49A88 953 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 RABGAP1LQ5R372 815 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 MBLAC2Q68D91 279 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 C11orf74Q86VG3 221 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 CCAR2Q8N163 923 aaKnown RBP16.66■□□□□ 0.26
TRIM28-213ENST00000598355 FAM160A2Q8N612 972 aaPredicted RBP16.66■□□□□ 0.26
TRIM28-213ENST00000598355 RNF34Q969K3 372 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 LOXL4Q96JB6 756 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 C1orf74Q96LT6 269 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 HAPLN3Q96S86 360 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 CIPCQ9C0C6 399 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 XPO4Q9C0E2 1151 aaKnown RBP16.66■□□□□ 0.26
TRIM28-213ENST00000598355 STIM2Q9P246 746 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 DCHS1Q96JQ0 3298 aa16.66■□□□□ 0.26
TRIM28-213ENST00000598355 GON4LQ3T8J9 2241 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 LRP3O75074 770 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 KRT3P12035 628 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 PDGFRAP16234 1089 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 SDC4P31431 198 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 RFC1P35251 1148 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-213ENST00000598355 GGCXP38435 758 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 PLK1P53350 603 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 HDAC4P56524 1084 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 ZBED6P86452 979 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 NRG1Q02297 640 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-213ENST00000598355 KLHL30Q0D2K2 578 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 CAMK2GQ13555 558 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-213ENST00000598355 SLC12A1Q13621 1099 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 ARID5BQ14865 1188 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 C15orf59Q2T9L4 293 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-213ENST00000598355 MAP7D1Q3KQU3 841 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 PLEKHG6Q3KR16 790 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 RAB6CQ53S08 254 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 MANEALQ5VSG8 457 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 PMS2CLQ68D20 193 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 SDE2Q6IQ49 451 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 PRR23BQ6ZRT6 265 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 SND1Q7KZF4 910 aaKnown RBP eCLIP16.65■□□□□ 0.26
TRIM28-213ENST00000598355 C14orf80Q86SX3 495 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 KBTBD6Q86V97 674 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 CIR1Q86X95 450 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-213ENST00000598355 CARNMT1Q8N4J0 409 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 KDM1BQ8NB78 822 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 HMGB4Q8WW32 186 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 MRGPRX1Q96LB2 322 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 RAB6CQ9H0N0 254 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 DUSP15Q9H1R2 295 aaPredicted RBP16.65■□□□□ 0.26
TRIM28-213ENST00000598355 SEPT11Q9NVA2 429 aaKnown RBP16.65■□□□□ 0.26
TRIM28-213ENST00000598355 ZNF212Q9UDV6 495 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 RAB23Q9ULC3 237 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 VANGL2Q9ULK5 521 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 RAD54BQ9Y620 910 aa16.65■□□□□ 0.26
TRIM28-213ENST00000598355 NUMA1Q14980 2115 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 EPN2O95208 641 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 ASLP04424 464 aa16.64■□□□□ 0.25
TRIM28-213ENST00000598355 ATP5BP06576 529 aaKnown RBP16.64■□□□□ 0.25
TRIM28-213ENST00000598355 RETP07949 1114 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms