RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 C14orf80Q86SX3 495 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 CDKL3Q8IVW4 592 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-209ENST00000597423 CCDC117Q8IWD4 279 aaPredicted RBP15.7■□□□□ 0.1
TRIM28-209ENST00000597423 ZDHHC14Q8IZN3 488 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 GPR161Q8N6U8 529 aaKnown RBP15.7■□□□□ 0.1
TRIM28-209ENST00000597423 CELF5Q8N6W0 485 aaKnown RBP15.7■□□□□ 0.1
TRIM28-209ENST00000597423 RTL3Q8N8U3 475 aaKnown RBP15.7■□□□□ 0.1
TRIM28-209ENST00000597423 SH3RF2Q8TEC5 729 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 RSAD2Q8WXG1 361 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 RUBCNQ92622 972 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 SLCO2A1Q92959 643 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 ZFRQ96KR1 1074 aaKnown RBP15.7■□□□□ 0.1
TRIM28-209ENST00000597423 CCDC114Q96M63 670 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 LRRC1Q9BTT6 524 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 RAB17Q9H0T7 212 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 CLDND1Q9NY35 253 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 AMACRQ9UHK6 382 aa15.7■□□□□ 0.1
TRIM28-209ENST00000597423 UTP11Q9Y3A2 253 aaKnown RBP15.7■□□□□ 0.1
TRIM28-209ENST00000597423 ZNF638Q14966 1978 aaKnown RBP15.69■□□□□ 0.1
TRIM28-209ENST00000597423 LINC01565O15544 149 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 CLDN11O75508 207 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 CYBBP04839 570 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 RBP3P10745 1247 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 CEBPBP17676 345 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 ACTN2P35609 894 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 MAPKAPK2P49137 400 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 NDST2P52849 883 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 CTC1Q2NKJ3 1217 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 STXBP5Q5T5C0 1151 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 NADSYN1Q6IA69 706 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 ARID3BQ8IVW6 561 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-209ENST00000597423 IFT20Q8IY31 132 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 ZNF683Q8IZ20 524 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 TTC16Q8NEE8 873 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 SLC35B2Q8TB61 432 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 ITFG1Q8TB96 612 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 TFB1MQ8WVM0 346 aaKnown RBP15.69■□□□□ 0.1
TRIM28-209ENST00000597423 ATG4AQ8WYN0 398 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 E2F7Q96AV8 911 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 TMA16Q96EY4 203 aaKnown RBP15.69■□□□□ 0.1
TRIM28-209ENST00000597423 NECTIN4Q96NY8 510 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 TMEM248Q9NWD8 314 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 DNPEPQ9ULA0 475 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 ZFP37Q9Y6Q3 630 aaPredicted RBP15.69■□□□□ 0.1
TRIM28-209ENST00000597423 PDE4DIPQ5VU43 2346 aa15.69■□□□□ 0.1
TRIM28-209ENST00000597423 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 GOLGA6L7A0A1B0GV03 622 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 NDC80O14777 642 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 CTIFO43310 598 aaKnown RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 MTSS1O43312 755 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 STK10O94804 968 aaKnown RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 RHOXF2BP0C7M4 288 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 CDH4P55283 916 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 GBE1Q04446 702 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 ZNF33AQ06730 810 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 ZNF177Q13360 481 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 ERCC6LQ2NKX8 1250 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 MPPE1Q53F39 396 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 FAM133BQ5BKY9 247 aaKnown RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 GPR153Q6NV75 609 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 NPNTQ6UXI9 565 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 C4orf22Q6V702 233 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 Q6ZNB5 142 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 ZC3H18Q86VM9 953 aaKnown RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 CPXM2Q8N436 756 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 CCDC89Q8N998 374 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 HJURPQ8NCD3 748 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 LRRN4CLQ8ND94 238 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 ZSCAN18Q8TBC5 510 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 ING5Q8WYH8 240 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 USP13Q92995 863 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 OTUB2Q96DC9 234 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 PABPC5Q96DU9 382 aaKnown RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 RHOXF2Q9BQY4 288 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 APOL5Q9BWW9 433 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 DTLQ9NZJ0 730 aa15.68■□□□□ 0.1
TRIM28-209ENST00000597423 SAE1Q9UBE0 346 aaPredicted RBP15.68■□□□□ 0.1
TRIM28-209ENST00000597423 BCLAF3A2AJT9 711 aaKnown RBP15.67■□□□□ 0.1
TRIM28-209ENST00000597423 SGK1O00141 431 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 RAD51CO43502 376 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 PECAM1P16284 738 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-209ENST00000597423 OR1E1P30953 314 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 GGCXP38435 758 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 KCNJ1P48048 391 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 OXCT1P55809 520 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 YBEYP58557 167 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-209ENST00000597423 CBX2Q14781 532 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-209ENST00000597423 OASLQ15646 514 aaKnown RBP15.67■□□□□ 0.1
TRIM28-209ENST00000597423 SLC45A4Q5BKX6 768 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 MPP7Q5T2T1 576 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 C6orf118Q5T5N4 469 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 TTC27Q6P3X3 843 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 CHST9Q7L1S5 443 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 FAM217AQ8IXS0 508 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 UMODL1-AS1Q8N2C9 162 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 CCNYQ8ND76 341 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 ADAMTS19Q8TE59 1207 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 FGF13Q92913 245 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 SMARCD2Q92925 531 aa15.67■□□□□ 0.1
TRIM28-209ENST00000597423 IGSF8Q969P0 613 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms