RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CLMPQ9H6B4 373 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 CCDC86Q9H6F5 360 aaKnown RBP9.81□□□□□ -0.84
TRIM28-208ENST00000597172 CCSER2Q9H7U1 834 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 ZDHHC7Q9NXF8 308 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 TRPM5Q9NZQ8 1165 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 UXTQ9UBK9 157 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-208ENST00000597172 SFMBT1Q9UHJ3 866 aa9.81□□□□□ -0.84
TRIM28-208ENST00000597172 PACSIN2Q9UNF0 486 aaPredicted RBP9.81□□□□□ -0.84
TRIM28-208ENST00000597172 KNTC1P50748 2209 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 C2orf78A6NCI8 922 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 M0QYT0 321 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 ENC1O14682 589 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 MDM4O15151 490 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 DDX3YO15523 660 aaKnown RBP9.8□□□□□ -0.84
TRIM28-208ENST00000597172 LRCH4O75427 683 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 RPP40O75818 363 aaKnown RBP9.8□□□□□ -0.84
TRIM28-208ENST00000597172 TRUB2O95900 331 aaKnown RBP9.8□□□□□ -0.84
TRIM28-208ENST00000597172 RHOP08100 348 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 IL1R2P27930 398 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 GABRR2P28476 465 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 MIPP30301 263 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 HOXA6P31267 233 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 RDXP35241 583 aaKnown RBP9.8□□□□□ -0.84
TRIM28-208ENST00000597172 SLC1A1P43005 524 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 PPP3CCP48454 512 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 SULT1E1P49888 294 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 PEX5P50542 639 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 SLC25A11Q02978 314 aaKnown RBP9.8□□□□□ -0.84
TRIM28-208ENST00000597172 SRSF1Q07955 248 aaKnown RBP eCLIP9.8□□□□□ -0.84
TRIM28-208ENST00000597172 CDO1Q16878 200 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 ATP13A4Q4VNC1 1196 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 PRSS36Q5K4E3 855 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 TXNRD3NBQ6F5E7 133 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 MSANTD2Q6P1R3 559 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 SYT10Q6XYQ8 523 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 CYP4V2Q6ZWL3 525 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-208ENST00000597172 PEX26Q7Z412 305 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 GRASPQ7Z6J2 395 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-208ENST00000597172 TAC4Q86UU9 113 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 TMEFF1Q8IYR6 380 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 SYCE1Q8N0S2 351 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 ELMOD1Q8N336 334 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 ZNF843Q8N446 348 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 CHCHD4Q8N4Q1 142 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 PDZD8Q8NEN9 1154 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 SHKBP1Q8TBC3 707 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 FAM172AQ8WUF8 416 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 FAM3CQ92520 227 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 DNASE1L2Q92874 299 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 PGAP3Q96FM1 320 aaPredicted RBP9.8□□□□□ -0.84
TRIM28-208ENST00000597172 HES6Q96HZ4 224 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 ALS2CR12Q96Q35 445 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 PEBP4Q96S96 227 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 CYP2S1Q96SQ9 504 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 TLR10Q9BXR5 811 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 TMEM9BQ9NQ34 198 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 PIGVQ9NUD9 493 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 RRN3Q9NYV6 651 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 DNAI1Q9UI46 699 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 LCMT1Q9UIC8 334 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 AMFRQ9UKV5 643 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 RAXQ9Y2V3 346 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 JRKLQ9Y4A0 524 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 ITPR3Q14573 2671 aa9.8□□□□□ -0.84
TRIM28-208ENST00000597172 C2CD3Q4AC94 2353 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 SYNJ2BP-COX16A0A087WUM0 186 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 H0Y626 953 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 I6L893 689 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-208ENST00000597172 COCHO43405 550 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 TLR5O60602 858 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 XYLBO75191 536 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 TRIM16O95361 564 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 OAS1P00973 400 aaKnown RBP9.79□□□□□ -0.84
TRIM28-208ENST00000597172 ATP1A1P05023 1023 aaKnown RBP9.79□□□□□ -0.84
TRIM28-208ENST00000597172 CHRNB1P11230 501 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 RALAP11233 206 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 MYL4P12829 197 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 TNNT1P13805 278 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 GJA1P17302 382 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 CTNNA2P26232 953 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 PCK1P35558 622 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 MARCKSL1P49006 195 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 CXCR3P49682 368 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 SIM1P81133 766 aaPredicted RBP9.79□□□□□ -0.84
TRIM28-208ENST00000597172 CYP4F8P98187 520 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 EFEMP1Q12805 493 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 SLC5A9Q2M3M2 681 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 UAP1L1Q3KQV9 507 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 PABPC1LQ4VXU2 614 aaKnown RBP9.79□□□□□ -0.84
TRIM28-208ENST00000597172 HECTD3Q5T447 861 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 TXNDC8Q6A555 127 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 STRADAQ7RTN6 431 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 RNF139Q8WU17 664 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 KRT35Q92764 455 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 SLC22A12Q96S37 553 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 TRIM62Q9BVG3 475 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 SLC46A2Q9BY10 475 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 MAGEB5Q9BZ81 275 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 SLC32A1Q9H598 525 aa9.79□□□□□ -0.84
TRIM28-208ENST00000597172 ANLNQ9NQW6 1124 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms