RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PDP2Q9P2J9 529 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 ZNF180Q9UJW8 692 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 APPL1Q9UKG1 709 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 ZBTB42B2RXF5 422 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 MFSD11O43934 449 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 GLRA3O75311 464 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 GSTA2P09210 222 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 FGF3P11487 239 aaPredicted RBP15.66■□□□□ 0.1
UPF1-204ENST00000596842 CPA3P15088 417 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 TSHRP16473 764 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 EPHA3P29320 983 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 ICAM3P32942 547 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 MRPS22P82650 360 aaKnown RBP15.66■□□□□ 0.1
UPF1-204ENST00000596842 IRF9Q00978 393 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 PPM1LQ5SGD2 360 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 IYDQ6PHW0 289 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 ATG14Q6ZNE5 492 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 DEFB132Q7Z7B7 95 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 STRA8Q7Z7C7 330 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 TBCBQ99426 244 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 CDH22Q9UJ99 828 aa15.66■□□□□ 0.1
UPF1-204ENST00000596842 FAM159BA6NKW6 160 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 C1QAP02745 245 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 AKAP5P24588 427 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 SULT1E1P49888 294 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 KCTD2Q14681 263 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 ACAP1Q15027 740 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 MBLAC2Q68D91 279 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 OLFML1Q6UWY5 402 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 KLRG1Q96E93 195 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 GBA2Q9HCG7 927 aaPredicted RBP15.65■□□□□ 0.1
UPF1-204ENST00000596842 DDX18Q9NVP1 670 aaKnown RBP15.65■□□□□ 0.1
UPF1-204ENST00000596842 TNFSF13BQ9Y275 285 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 IGKV6D-21A0A0A0MT36 114 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 BCLAF3A2AJT9 711 aaKnown RBP15.65■□□□□ 0.1
UPF1-204ENST00000596842 KLHL2O95198 593 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 SERPINE1P05121 402 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 PFKMP08237 780 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 L1CAMP32004 1257 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 LCLAT1Q6UWP7 414 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 USP33Q8TEY7 942 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 CENPKQ9BS16 269 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 COG4Q9H9E3 785 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 ELP3Q9H9T3 547 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 PRMT7Q9NVM4 692 aaPredicted RBP15.65■□□□□ 0.1
UPF1-204ENST00000596842 EMCNQ9ULC0 261 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 LZTS1Q9Y250 596 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 ASB3Q9Y575 518 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 F8W8V4 182 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 ARRB2P32121 409 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 CCNFP41002 786 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 MPP3Q13368 585 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 PCLAFQ15004 111 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 SLC9B1Q4ZJI4 515 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 CCNYL1Q8N7R7 359 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 PPP2R3CQ969Q6 453 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 CNBD2Q96M20 576 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 KLHL4Q9C0H6 718 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 PTPRHQ9HD43 1115 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 TUBGCP4Q9UGJ1 667 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 SLC39A10Q9ULF5 831 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 POMPQ9Y244 141 aa15.65■□□□□ 0.1
UPF1-204ENST00000596842 ACAT1P24752 427 aaKnown RBP15.64■□□□□ 0.09
UPF1-204ENST00000596842 GABRB2P47870 512 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 GRM1Q13255 1194 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 MOB2Q70IA6 237 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 NANOGNBQ7Z5D8 188 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 SATL1Q86VE3 508 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 DCLK2Q8N568 766 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 FAM156AQ8NDB6 213 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 ICA1LQ8NDH6 482 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.64■□□□□ 0.094e-7■■■□□ 18.4
UPF1-204ENST00000596842 TMA16Q96EY4 203 aaKnown RBP15.64■□□□□ 0.09
UPF1-204ENST00000596842 P2RY11Q96G91 374 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 YIPF2Q9BWQ6 316 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 NUF2Q9BZD4 464 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 PDZD7Q9H5P4 517 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 GOLGA2P5Q9HBQ8 144 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 WDR81Q562E7 1941 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 CITO14578 2027 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP15.64■□□□□ 0.09
UPF1-204ENST00000596842 SNNO75324 88 aaPredicted RBP15.64■□□□□ 0.09
UPF1-204ENST00000596842 MX2P20592 715 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 LMO2P25791 158 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 BAG6P46379 1132 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 CNPY1Q3B7I2 92 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 MAVSQ7Z434 540 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 CMTM5Q96DZ9 223 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 PRDM12Q9H4Q4 367 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 TMA7Q9Y2S6 64 aaKnown RBP15.64■□□□□ 0.09
UPF1-204ENST00000596842 PHGDHO43175 533 aaKnown RBP15.64■□□□□ 0.09
UPF1-204ENST00000596842 CHRNGP07510 517 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 ABCE1P61221 599 aaKnown RBP15.64■□□□□ 0.09
UPF1-204ENST00000596842 VGLL4Q14135 290 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 SH2D4BQ5SQS7 431 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 CELF3Q5SZQ8 465 aaKnown RBP15.64■□□□□ 0.09
UPF1-204ENST00000596842 ZNF618Q5T7W0 954 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 TMEM198Q66K66 360 aa15.64■□□□□ 0.09
UPF1-204ENST00000596842 KYAT3Q6YP21 454 aaKnown RBP15.64■□□□□ 0.09
UPF1-204ENST00000596842 CTU1Q7Z7A3 348 aaKnown RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms