RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 RING1Q06587 406 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 PPIDQ08752 370 aaKnown RBP20.41■□□□□ 0.86
TRIM47-204ENST00000587339 GALNT2Q10471 571 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 HP1BP3Q5SSJ5 553 aaPredicted RBP20.41■□□□□ 0.86
TRIM47-204ENST00000587339 FNBP1LQ5T0N5 605 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 SNX30Q5VWJ9 437 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 CROCCP2Q86T23 111 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 TADA2BQ86TJ2 420 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 HDAC11Q96DB2 347 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 MYRFLQ96LU7 910 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 ZBP1Q9H171 429 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 LRRC4CQ9HCJ2 640 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 ADAM21Q9UKJ8 722 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 SSX2IPQ9Y2D8 614 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 ZNF840PA6NDX5 716 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 EIF3HO15372 352 aaKnown RBP eCLIP20.41■□□□□ 0.86
TRIM47-204ENST00000587339 LILRB3O75022 631 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 IGLV3-27P01718 113 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 HMBSP08397 361 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 CTSAP10619 480 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 ATP5C1P36542 298 aaKnown RBP20.41■□□□□ 0.86
TRIM47-204ENST00000587339 GARSP41250 739 aaKnown RBP20.41■□□□□ 0.86
TRIM47-204ENST00000587339 HERC6Q8IVU3 1022 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 TCEAL8Q8IYN2 117 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 ZNF276Q8N554 614 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 KLHL23Q8NBE8 558 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 FAM76AQ8TAV0 307 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 EXOC4Q96A65 974 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 RAD9AQ99638 391 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 TMEM109Q9BVC6 243 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 NACA2Q9H009 215 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 BCCIPQ9P287 314 aaKnown RBP eCLIP20.41■□□□□ 0.86
TRIM47-204ENST00000587339 DNMT3LQ9UJW3 386 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 SLC4A7Q9Y6M7 1214 aa20.41■□□□□ 0.86
TRIM47-204ENST00000587339 KIAA1671Q9BY89 1806 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 KCNK1O00180 336 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 MAGEA6P43360 314 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 WASHC5Q12768 1159 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 TWF1Q12792 350 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 MS4A13Q5J8X5 152 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 LRRC31Q6UY01 552 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 C14orf80Q86SX3 495 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 CCDC13Q8IYE1 715 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 SH2D3CQ8N5H7 860 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 LZTR1Q8N653 840 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 TRMT2BQ96GJ1 504 aaKnown RBP20.4■□□□□ 0.86
TRIM47-204ENST00000587339 CELF6Q96J87 481 aaKnown RBP20.4■□□□□ 0.86
TRIM47-204ENST00000587339 FRMD8Q9BZ67 464 aaPredicted RBP20.4■□□□□ 0.86
TRIM47-204ENST00000587339 RXFP1Q9HBX9 757 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 PRDM10Q9NQV6 1147 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 TRPM5Q9NZQ8 1165 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 VANGL2Q9ULK5 521 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 MAFFQ9ULX9 164 aa20.4■□□□□ 0.86
TRIM47-204ENST00000587339 TLDC2A0PJX2 215 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 E7ESA3 106 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 E7EVH7 732 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 MTSS1O43312 755 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 SYN1P17600 705 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 MTM1Q13496 603 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 MSS51Q4VC12 460 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 ARTNQ5T4W7 220 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 PYROXD1Q8WU10 500 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 CEP41Q9BYV8 373 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 ROPN1BQ9BZX4 212 aaPredicted RBP20.39■□□□□ 0.86
TRIM47-204ENST00000587339 ROPN1Q9HAT0 212 aaPredicted RBP20.39■□□□□ 0.86
TRIM47-204ENST00000587339 MPP6Q9NZW5 540 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 INSL5Q9Y5Q6 135 aa20.39■□□□□ 0.86
TRIM47-204ENST00000587339 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.39■□□□□ 0.86
TRIM47-204ENST00000587339 SMIM23A6NLE4 172 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 RASGRF2O14827 1237 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 TLL1O43897 1013 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 BANF1O75531 89 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 FDFT1P37268 417 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 EPHB3P54753 998 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 MTA1Q13330 715 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 SEMA5AQ13591 1074 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 AUHQ13825 339 aaKnown RBP20.39■□□□□ 0.85
TRIM47-204ENST00000587339 BBS9Q3SYG4 887 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 HECTD3Q5T447 861 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 C6orf118Q5T5N4 469 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 ACBD5Q5T8D3 534 aaPredicted RBP20.39■□□□□ 0.85
TRIM47-204ENST00000587339 NUGGCQ68CJ6 796 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 ANKMY2Q8IV38 441 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 ZNF567Q8N184 647 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 EPS8L3Q8TE67 593 aaKnown RBP20.39■□□□□ 0.85
TRIM47-204ENST00000587339 HERVK_113Q902F9 699 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 HBS1LQ9Y450 684 aaKnown RBP20.39■□□□□ 0.85
TRIM47-204ENST00000587339 ALPK3Q96L96 1907 aa20.39■□□□□ 0.85
TRIM47-204ENST00000587339 ABHD2P08910 425 aa20.38■□□□□ 0.85
TRIM47-204ENST00000587339 CNPP09543 421 aaKnown RBP20.38■□□□□ 0.85
TRIM47-204ENST00000587339 ATP2A2P16615 1042 aaKnown RBP20.38■□□□□ 0.85
TRIM47-204ENST00000587339 SLCO1A2P46721 670 aa20.38■□□□□ 0.85
TRIM47-204ENST00000587339 COG7P83436 770 aa20.38■□□□□ 0.85
TRIM47-204ENST00000587339 PLD1Q13393 1074 aa20.38■□□□□ 0.85
TRIM47-204ENST00000587339 SKIDA1Q1XH10 827 aa20.38■□□□□ 0.85
TRIM47-204ENST00000587339 AGBL2Q5U5Z8 902 aa20.38■□□□□ 0.85
TRIM47-204ENST00000587339 KLHDC10Q6PID8 442 aa20.38■□□□□ 0.85
TRIM47-204ENST00000587339 PID1Q7Z2X4 250 aa20.38■□□□□ 0.85
TRIM47-204ENST00000587339 TMC7Q7Z402 723 aa20.38■□□□□ 0.85
TRIM47-204ENST00000587339 RTL3Q8N8U3 475 aaKnown RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms