RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, human

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF540-204	ENST00000586792	SARG	Q9BW04	601 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	BOC	Q9BWV1	1114 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	RNPEP	Q9H4A4	650 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	SLC28A3	Q9HAS3	691 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	ALG13	Q9NP73	1137 aa	Known RBP	5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	PLCB1	Q9NQ66	1216 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	OBP2A	Q9NY56	170 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	DDX25	Q9UHL0	483 aa	Known RBP	5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	ACAD8	Q9UKU7	415 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	KCNJ14	Q9UNX9	436 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	LIMCH1	Q9UPQ0	1083 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	MAPRE3	Q9UPY8	281 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	PCDHA10	Q9Y5I2	948 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	COL1A2	P08123	1366 aa		5.13	□□□□□ -1.59
ZNF540-204	ENST00000586792	IGLV3-22	A0A075B6J6	115 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	ABHD14A-ACY1	A0A1B0GW23	586 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	GSTTP1	A0A1W2PQM5	241 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	ANO9	A1A5B4	782 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	VSTM5	A8MXK1	200 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	PRR5-ARHGAP8	B1AHC4	643 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	HBP1	O60381	514 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	PROP1	O75360	226 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	MATN4	O95460	622 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	TDP2	O95551	362 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	MMP1	P03956	469 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	ZSCAN20	P17040	1043 aa	Predicted RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	CIITA	P33076	1130 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	CCT5	P48643	541 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	MCM2	P49736	904 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	ITGB3BP	Q13352	177 aa	Predicted RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	MRPL49	Q13405	166 aa	Known RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	ARHGAP44	Q17R89	818 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792		Q4G0T1	1027 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	ZNF484	Q5JVG2	852 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	ZNF618	Q5T7W0	954 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	PRAMEF9	Q5VWM5	478 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	FAM109B	Q6ICB4	259 aa	Predicted RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	CXorf57	Q6NSI4	855 aa	Known RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	SWSAP1	Q6NVH7	229 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	MOXD1	Q6UVY6	613 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	TRMT1L	Q7Z2T5	733 aa	Known RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	MIER3	Q7Z3K6	550 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	DIS3L2	Q8IYB7	885 aa	Known RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	UBR7	Q8N806	425 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	NSUN7	Q8NE18	718 aa	Known RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	RDM1	Q8NG50	284 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	ATP8B4	Q8TF62	1192 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	GOLGA1	Q92805	767 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	APBB2	Q92870	758 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	C8orf76	Q96K31	380 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	MAGEB10	Q96LZ2	347 aa	Predicted RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	AIFM3	Q96NN9	605 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	TUBGCP5	Q96RT8	1024 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	LLPH	Q9BRT6	129 aa	Known RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	LSM14B	Q9BX40	385 aa	Known RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	FAM49A	Q9H0Q0	323 aa	Predicted RBP	5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	NRBP2	Q9NSY0	501 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	GINS2	Q9Y248	185 aa		5.12	□□□□□ -1.59
ZNF540-204	ENST00000586792	PABPN1L	A6NDY0	278 aa	Known RBP	5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	UNC119B	A6NIH7	251 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792		H3BQV1	296 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	LEFTY2	O00292	366 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	MSH4	O15457	936 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	NEMF	O60524	1076 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	JAK2	O60674	1132 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	RFPL1	O75677	317 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	LARGE1	O95461	756 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	CCNE2	O96020	404 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	HNRNPC	P07910	306 aa	Known RBP eCLIP	5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	FOSL2	P15408	326 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	TMOD1	P28289	359 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	RNASE9	P60153	205 aa	Known RBP	5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	MRPS6	P82932	125 aa	Known RBP	5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	TP53BP2	Q13625	1128 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	PLCB4	Q15147	1175 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	C1orf228	Q6PIY5	440 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	ABHD15	Q6UXT9	468 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792		Q7L0L9	218 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	RSRC2	Q7L4I2	434 aa	Known RBP	5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	MTERF4	Q7Z6M4	381 aa	Known RBP	5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	RPAIN	Q86UA6	219 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	LCA5	Q86VQ0	697 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	RASSF3	Q86WH2	238 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	CCDC60	Q8IWA6	550 aa	Predicted RBP	5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	NDUFAF2	Q8N183	169 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	METTL13	Q8N6R0	699 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	USP38	Q8NB14	1042 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	PHOSPHO2	Q8TCD6	241 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	DNAJB3	Q8WWF6	145 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	CRYGN	Q8WXF5	182 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	SLC5A5	Q92911	643 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	TRIM63	Q969Q1	353 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	FAM20A	Q96MK3	541 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	DHRS4	Q9BTZ2	278 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	IFIH1	Q9BYX4	1025 aa	Known RBP	5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	ING3	Q9NXR8	418 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	PFDN2	Q9UHV9	154 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	ODF2L	Q9ULJ1	636 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	SPEF1	Q9Y4P9	236 aa		5.11	□□□□□ -1.59
ZNF540-204	ENST00000586792	TRPV2	Q9Y5S1	764 aa		5.11	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms