RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ZNF567Q8N184 647 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 CCDC33Q8N5R6 958 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 LRRN4Q8WUT4 740 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 ATXN2LQ8WWM7 1075 aaKnown RBP14.58□□□□□ -0.08
LIG3-205ENST00000585941 SLC39A13Q96H72 371 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 FCRL2Q96LA5 508 aaPredicted RBP14.58□□□□□ -0.08
LIG3-205ENST00000585941 TSGA13Q96PP4 275 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 SMC6Q96SB8 1091 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 CCT8L2Q96SF2 557 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 CDK5RAP1Q96SZ6 601 aaKnown RBP14.58□□□□□ -0.08
LIG3-205ENST00000585941 PAFAH2Q99487 392 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 EBNA1BP2Q99848 306 aaKnown RBP14.58□□□□□ -0.08
LIG3-205ENST00000585941 SIK2Q9H0K1 926 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 KCNK9Q9NPC2 374 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 TMEM39AQ9NV64 488 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 SEPT10Q9P0V9 454 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 GMIPQ9P107 970 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 KLHL8Q9P2G9 620 aaPredicted RBP14.58□□□□□ -0.08
LIG3-205ENST00000585941 HSFX1Q9UBD0 423 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 SFMBT1Q9UHJ3 866 aa14.58□□□□□ -0.08
LIG3-205ENST00000585941 NUP205Q92621 2012 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 TCRBV9S1A1TA0A576 114 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 NT5C1B-RDH14C9J2C7 533 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 AP3B1O00203 1094 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 PRPF4O43172 522 aaKnown RBP eCLIP14.57□□□□□ -0.08
LIG3-205ENST00000585941 EFCAB14O75071 495 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 APOEP02649 317 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 PTPN3P26045 913 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 TUFMP49411 452 aaKnown RBP14.57□□□□□ -0.08
LIG3-205ENST00000585941 GPR15P49685 360 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 TBX4P57082 545 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 RNF19BQ6ZMZ0 732 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 IGDCC3Q8IVU1 814 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 ZNF276Q8N554 614 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 NPWQ8N729 165 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 ATP6V0D2Q8N8Y2 350 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 CHMP6Q96FZ7 201 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 SGSM3Q96HU1 749 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 B3GALT6Q96L58 329 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 SIGLEC10Q96LC7 697 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 PPP1R2P1Q96PQ5 205 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 SEPT5Q99719 369 aaPredicted RBP14.57□□□□□ -0.08
LIG3-205ENST00000585941 WBP1LQ9NX94 342 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 MTRRQ9UBK8 725 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 LTBP2Q14767 1821 aa14.57□□□□□ -0.08
LIG3-205ENST00000585941 IQANK1A0A1B0GTG1 560 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 SDR42E2A6NKP2 422 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 WASH4PA8MWX3 477 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 EBAG9O00559 213 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 PSMD3O43242 534 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 MSI1O43347 362 aaKnown RBP14.56□□□□□ -0.08
LIG3-205ENST00000585941 AVILO75366 819 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 CLTBP09497 229 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 SRGAP2BP0DMP2 458 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 CCNCP24863 283 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 GBP2P32456 591 aaPredicted RBP14.56□□□□□ -0.08
LIG3-205ENST00000585941 MLLT6P55198 1093 aaPredicted RBP14.56□□□□□ -0.08
LIG3-205ENST00000585941 HNRNPH2P55795 449 aaKnown RBP14.56□□□□□ -0.08
LIG3-205ENST00000585941 USP46P62068 366 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 TRIP4Q15650 581 aaPredicted RBP14.56□□□□□ -0.08
LIG3-205ENST00000585941 SYCP2LQ5T4T6 812 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 SDHAF4Q5VUM1 108 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 NUGGCQ68CJ6 796 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 LIN28BQ6ZN17 250 aaKnown RBP eCLIP14.56□□□□□ -0.08
LIG3-205ENST00000585941 ZNF534Q76KX8 674 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 FBXO22Q8NEZ5 403 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 ZNF473Q8WTR7 871 aaKnown RBP14.56□□□□□ -0.08
LIG3-205ENST00000585941 DYDC1Q8WWB3 177 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 SLC44A1Q8WWI5 657 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 ALKBH8Q96BT7 664 aaKnown RBP14.56□□□□□ -0.08
LIG3-205ENST00000585941 CFAP36Q96G28 342 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 IGSF21Q96ID5 467 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 ZNF333Q96JL9 665 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 TRABDQ9H4I3 376 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 CWH43Q9H720 699 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.56□□□□□ -0.08
LIG3-205ENST00000585941 OSER1Q9NX31 292 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 NEU3Q9UQ49 428 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 ATP11BQ9Y2G3 1177 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 SNX10Q9Y5X0 201 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 SHROOM3Q8TF72 1996 aa14.56□□□□□ -0.08
LIG3-205ENST00000585941 FAM47DPA6NHR8 397 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 UPP2O95045 317 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 INHBAP08476 426 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 PRKCHP24723 683 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 PSMB4P28070 264 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 PGFP49763 221 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 SEC24CP53992 1094 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 RING1Q06587 406 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 TAF10Q12962 218 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 PSMD5Q16401 504 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 PKN2Q16513 984 aaKnown RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 TEX44Q53QW1 395 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 LGSNQ5TDP6 509 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 KIAA1841Q6NSI8 718 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 TIGD7Q6NT04 549 aaPredicted RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 RSPO2Q6UXX9 243 aaPredicted RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 RNF168Q8IYW5 571 aaPredicted RBP14.55□□□□□ -0.08
LIG3-205ENST00000585941 TTC9BQ8N6N2 239 aa14.55□□□□□ -0.08
LIG3-205ENST00000585941 PDCD7Q8N8D1 485 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms