RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 LUC7L3O95232 432 aaKnown RBP12.8□□□□□ -0.36
SS18-225ENST00000585121 F9P00740 461 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 HLA-EP13747 358 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 ITPKAP23677 461 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 SCNN1AP37088 669 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 CSKP41240 450 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 STAT1P42224 750 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 MATKP42679 507 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 GABRB2P47870 512 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 PITX1P78337 314 aaPredicted RBP12.8□□□□□ -0.36
SS18-225ENST00000585121 UBXN1Q04323 297 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 TYRO3Q06418 890 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 ZNF33AQ06730 810 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 CAMK2GQ13555 558 aaPredicted RBP12.8□□□□□ -0.36
SS18-225ENST00000585121 DUOXA1Q1HG43 343 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 TRIM61Q5EBN2 209 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 WDR45BQ5MNZ6 344 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 FAM102AQ5T9C2 384 aaPredicted RBP12.8□□□□□ -0.36
SS18-225ENST00000585121 RNF219Q5W0B1 726 aaPredicted RBP12.8□□□□□ -0.36
SS18-225ENST00000585121 RGL4Q8IZJ4 473 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 WFDC5Q8TCV5 224 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 TTC17Q96AE7 1141 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 TOE1Q96GM8 510 aaKnown RBP12.8□□□□□ -0.36
SS18-225ENST00000585121 NUP58Q9BVL2 599 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 GANQ9H2C0 597 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 NLRC4Q9NPP4 1024 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 TMEM9BQ9NQ34 198 aa12.8□□□□□ -0.36
SS18-225ENST00000585121 XPO7Q9UIA9 1087 aaKnown RBP12.8□□□□□ -0.36
SS18-225ENST00000585121 LGALS16A8MUM7 142 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 CFIP05156 583 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 KCNA4P22459 653 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 SOX5P35711 763 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 NNMTP40261 264 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 SULT1E1P49888 294 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 COPAP53621 1224 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 ATXN3P54252 364 aaPredicted RBP12.79□□□□□ -0.36
SS18-225ENST00000585121 SFSWAPQ12872 951 aaKnown RBP12.79□□□□□ -0.36
SS18-225ENST00000585121 EIF4EBP2Q13542 120 aaPredicted RBP12.79□□□□□ -0.36
SS18-225ENST00000585121 SLC12A1Q13621 1099 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 SYCP1Q15431 976 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 GON4LQ3T8J9 2241 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 THADAQ6YHU6 1953 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 NOP9Q86U38 636 aaKnown RBP12.79□□□□□ -0.36
SS18-225ENST00000585121 EPS8L1Q8TE68 723 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 MYEOVQ96EZ4 313 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 HSPA12BQ96MM6 686 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 RPRD1AQ96P16 312 aaPredicted RBP12.79□□□□□ -0.36
SS18-225ENST00000585121 TMEM245Q9H330 911 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 WDCPQ9H6R7 721 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 RXFP3Q9NSD7 469 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 USP36Q9P275 1121 aaKnown RBP12.79□□□□□ -0.36
SS18-225ENST00000585121 PILRBQ9UKJ0 227 aa12.79□□□□□ -0.36
SS18-225ENST00000585121 A0A1B0GVM2 712 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 LNP1A1A4G5 178 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 TCAF2A6NFQ2 919 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 C4orf47A7E2U8 309 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 SMTNL1A8MU46 457 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 MEI4A8MW99 385 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 PATE3B3GLJ2 98 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 RNASEH1O60930 286 aaKnown RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 DNTTP04053 509 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 SRPRAP08240 638 aaKnown RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 MMEP08473 750 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 GNSP15586 552 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 KLK7P49862 253 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 TPMTP51580 245 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 IRX4P78413 519 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 ZBTB16Q05516 673 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 GFPT1Q06210 699 aaPredicted RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 SULT2A1Q06520 285 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 PTPRNQ16849 979 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 PPM1JQ5JR12 505 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 PITRM1Q5JRX3 1037 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 BRMS1LQ5PSV4 323 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 ACBD5Q5T8D3 534 aaPredicted RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 NAA35Q5VZE5 725 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 LRSAM1Q6UWE0 723 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 TRIM72Q6ZMU5 477 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 CACUL1Q86Y37 369 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 XYLT1Q86Y38 959 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 AOPEPQ8N6M6 819 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 ZNF366Q8N895 744 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 KDM1BQ8NB78 822 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 CPA5Q8WXQ8 436 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 ZNF419Q96HQ0 510 aaPredicted RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 LMLNQ96KR4 655 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 GPR174Q9BXC1 333 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 TMEM74BQ9NUR3 256 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 WSB2Q9NYS7 404 aaPredicted RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 SUSD2Q9UGT4 822 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 SLC6A14Q9UN76 642 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 SIK3Q9Y2K2 1263 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 SPTBN2O15020 2390 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 ATXN2Q99700 1313 aaKnown RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 MED19A0JLT2 244 aaPredicted RBP12.78□□□□□ -0.36
SS18-225ENST00000585121 LRRC10BA6NIK2 292 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 GOLGA8SH3BPF8 625 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 SERPINF2P08697 491 aa12.78□□□□□ -0.36
SS18-225ENST00000585121 CCDC172P0C7W6 258 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms