RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 POMKQ9H5K3 350 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 CATSPERBQ9H7T0 1116 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 UBE2ZQ9H832 354 aaPredicted RBP16.64■□□□□ 0.25
SS18-211ENST00000578954 ETNK2Q9NVF9 386 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 TMEM248Q9NWD8 314 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 STIM2Q9P246 746 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 ZNF212Q9UDV6 495 aa16.64■□□□□ 0.25
SS18-211ENST00000578954 KIF26AQ9ULI4 1882 aaPredicted RBP16.63■□□□□ 0.25
SS18-211ENST00000578954 GOLGA6L10A0A0M3HER8 536 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 CTAGE15A4D2H0 777 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 KRIT1O00522 736 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 CTAGE8P0CG41 777 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 FOSL2P15408 326 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 FCARP24071 287 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 TTC39BQ5VTQ0 682 aaPredicted RBP16.63■□□□□ 0.25
SS18-211ENST00000578954 EP400NLQ6ZTU2 488 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 CTAGE6Q86UF2 777 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 BBS7Q8IWZ6 715 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 CTAGE4Q8IX94 777 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 LGI2Q8N0V4 545 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 DEFB123Q8N688 67 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 SLC35B2Q8TB61 432 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 OTUB2Q96DC9 234 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 RSPRY1Q96DX4 576 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 MYADMQ96S97 322 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 KLC2Q9H0B6 622 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 LRRC19Q9H756 370 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 HOMER3Q9NSC5 361 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 RBM12Q9NTZ6 932 aaKnown RBP16.63■□□□□ 0.25
SS18-211ENST00000578954 TBC1D14Q9P2M4 693 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 R3HDM2Q9Y2K5 976 aaKnown RBP16.63■□□□□ 0.25
SS18-211ENST00000578954 USP15Q9Y4E8 981 aaPredicted RBP16.63■□□□□ 0.25
SS18-211ENST00000578954 RAD54BQ9Y620 910 aa16.63■□□□□ 0.25
SS18-211ENST00000578954 DAPK3O43293 454 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 PHF2O75151 1096 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 PECAM1P16284 738 aaPredicted RBP16.62■□□□□ 0.25
SS18-211ENST00000578954 CHKAP35790 457 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 NR2C2P49116 596 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 IRAK1P51617 712 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 DYNLT1P63172 113 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 SMAD4Q13485 552 aaKnown RBP16.62■□□□□ 0.25
SS18-211ENST00000578954 NOMO1Q15155 1222 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 CCNG2Q16589 344 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 RABGAP1LQ5R372 815 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 AFMIDQ63HM1 303 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 RWDD4Q6NW29 188 aaKnown RBP16.62■□□□□ 0.25
SS18-211ENST00000578954 RFWD3Q6PCD5 774 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 TMCO3Q6UWJ1 677 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 CHST9Q7L1S5 443 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 ADAT2Q7Z6V5 191 aaKnown RBP16.62■□□□□ 0.25
SS18-211ENST00000578954 LZTR1Q8N653 840 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 ACTL9Q8TC94 416 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 NKD2Q969F2 451 aaPredicted RBP16.62■□□□□ 0.25
SS18-211ENST00000578954 E2F7Q96AV8 911 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 RPRD1AQ96P16 312 aaPredicted RBP16.62■□□□□ 0.25
SS18-211ENST00000578954 OLFM3Q96PB7 478 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 AP1M1Q9BXS5 423 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 DONSONQ9NYP3 566 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 MFHAS1Q9Y4C4 1052 aa16.62■□□□□ 0.25
SS18-211ENST00000578954 REV3LO60673 3130 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 GRXCR2A6NFK2 248 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 RIOK3O14730 519 aaKnown RBP16.61■□□□□ 0.25
SS18-211ENST00000578954 SLC9A3R1O14745 358 aaPredicted RBP16.61■□□□□ 0.25
SS18-211ENST00000578954 MFSD11O43934 449 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 CNTN5O94779 1100 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 SLU7O95391 586 aaKnown RBP16.61■□□□□ 0.25
SS18-211ENST00000578954 SERPINB6P35237 376 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 MAPKAPK2P49137 400 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 FNTAP49354 379 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 OTUD4Q01804 1114 aaKnown RBP16.61■□□□□ 0.25
SS18-211ENST00000578954 GBE1Q04446 702 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 C2orf54Q08AI8 447 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 ALFQ53S48 1182 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 MPP7Q5T2T1 576 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 UMODL1-AS1Q8N2C9 162 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 MMGT1Q8N4V1 131 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 NPWQ8N729 165 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 P3H4Q92791 437 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 LRRC3BQ96PB8 259 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 DTLQ9NZJ0 730 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 MPP6Q9NZW5 540 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 EPS15L1Q9UBC2 864 aa16.61■□□□□ 0.25
SS18-211ENST00000578954 SZT2Q5T011 3432 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 A0A1B0GVM2 712 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 TCAF2A6NFQ2 919 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 H3BQ06 376 aaPredicted RBP16.6■□□□□ 0.25
SS18-211ENST00000578954 MBTPS2O43462 519 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 LIASO43766 372 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 CLDN11O75508 207 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 LAMP2P13473 410 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 CHRNA3P32297 505 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 VIPR2P41587 438 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 CDH4P55283 916 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 SLC10A2Q12908 348 aaPredicted RBP16.6■□□□□ 0.25
SS18-211ENST00000578954 XRCC4Q13426 336 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 OASLQ15646 514 aaKnown RBP16.6■□□□□ 0.25
SS18-211ENST00000578954 NPNTQ6UXI9 565 aa16.6■□□□□ 0.25
SS18-211ENST00000578954 BZW1Q7L1Q6 419 aaKnown RBP16.6■□□□□ 0.25
SS18-211ENST00000578954 TDRD5Q8NAT2 981 aaKnown RBP16.6■□□□□ 0.25
SS18-211ENST00000578954 HJURPQ8NCD3 748 aaPredicted RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms