RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 M0QYT0 321 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 DAB1O75553 588 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 LSM8O95777 96 aaKnown RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 NOS2P35228 1153 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 MAPK8P45983 427 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 TPMTP51580 245 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 POLR2FP61218 127 aaKnown RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 PITX1P78337 314 aaPredicted RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 IRX4P78413 519 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 GFPT1Q06210 699 aaPredicted RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 CAMK2GQ13555 558 aaPredicted RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 FAM102AQ5T9C2 384 aaPredicted RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 LRSAM1Q6UWE0 723 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 SLC26A9Q7LBE3 791 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 KIAA0907Q7Z7F0 614 aaPredicted RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 ZNF366Q8N895 744 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 RPRD1AQ96P16 312 aaPredicted RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 NUP58Q9BVL2 599 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 GPR174Q9BXC1 333 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 NAA15Q9BXJ9 866 aaKnown RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 TMEM245Q9H330 911 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 TMEM74BQ9NUR3 256 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.04■□□□□ 0.166e-12■□□□□ 8.9
SF3B3-215ENST00000577085 USP36Q9P275 1121 aaKnown RBP16.04■□□□□ 0.16
SF3B3-215ENST00000577085 SUSD2Q9UGT4 822 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 PAXBP1Q9Y5B6 917 aa16.04■□□□□ 0.16
SF3B3-215ENST00000577085 SDK1Q7Z5N4 2213 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 FAM170AA1A519 330 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 RNASEH1O60930 286 aaKnown RBP16.03■□□□□ 0.16
SF3B3-215ENST00000577085 GFPT2O94808 682 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 DNTTP04053 509 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 NNMTP40261 264 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 CSKP41240 450 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 MATKP42679 507 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 SULT1E1P49888 294 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 COPAP53621 1224 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 PTPRNQ16849 979 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 UAP1L1Q3KQV9 507 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 TTC31Q49AM3 519 aaPredicted RBP16.03■□□□□ 0.16
SF3B3-215ENST00000577085 PITRM1Q5JRX3 1037 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 SLC23A3Q6PIS1 610 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 NOP9Q86U38 636 aaKnown RBP16.03■□□□□ 0.16
SF3B3-215ENST00000577085 FAM124AQ86V42 546 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 NEK11Q8NG66 645 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 PPP1R9BQ96SB3 815 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 GTPBP2Q9BX10 602 aaKnown RBP16.03■□□□□ 0.16
SF3B3-215ENST00000577085 CD93Q9NPY3 652 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 SLC6A14Q9UN76 642 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 DAAM1Q9Y4D1 1078 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 ABCA7Q8IZY2 2146 aa16.03■□□□□ 0.16
SF3B3-215ENST00000577085 PLXND1Q9Y4D7 1925 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 GOLGA8SH3BPF8 625 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 SYPP08247 313 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 MMEP08473 750 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 ENGP17813 658 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 CDH5P33151 784 aaPredicted RBP16.02■□□□□ 0.16
SF3B3-215ENST00000577085 COPB1P53618 953 aaKnown RBP16.02■□□□□ 0.16
SF3B3-215ENST00000577085 OXCT1P55809 520 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 ECT2LQ008S8 904 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 UBXN1Q04323 297 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 SYCP1Q15431 976 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 FSCBQ5H9T9 825 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 NAA35Q5VZE5 725 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 DPY19L2P1Q6NXN4 242 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 MMS22LQ6ZRQ5 1243 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 ZNF677Q86XU0 584 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 ZNF397Q8NF99 534 aaPredicted RBP16.02■□□□□ 0.16
SF3B3-215ENST00000577085 CADM4Q8NFZ8 388 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 GANCQ8TET4 914 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 CPA5Q8WXQ8 436 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 TTC17Q96AE7 1141 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 MYEOVQ96EZ4 313 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 ZNF419Q96HQ0 510 aaPredicted RBP16.02■□□□□ 0.16
SF3B3-215ENST00000577085 SIK2Q9H0K1 926 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 WDCPQ9H6R7 721 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 NLRC4Q9NPP4 1024 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 PRSS16Q9NQE7 514 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 TMEM51Q9NW97 253 aa16.02■□□□□ 0.16
SF3B3-215ENST00000577085 WSB2Q9NYS7 404 aaPredicted RBP16.02■□□□□ 0.16
SF3B3-215ENST00000577085 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.01■□□□□ 0.15
SF3B3-215ENST00000577085 A0A1B0GVM2 712 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 TCAF2A6NFQ2 919 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 F9P00740 461 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 SRPRAP08240 638 aaKnown RBP16.01■□□□□ 0.15
SF3B3-215ENST00000577085 SERPINF2P08697 491 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 SOX5P35711 763 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 STAT1P42224 750 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 KLK7P49862 253 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 ZBTB16Q05516 673 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 DEUP1Q05D60 604 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 SFSWAPQ12872 951 aaKnown RBP16.01■□□□□ 0.15
SF3B3-215ENST00000577085 ZNF177Q13360 481 aaPredicted RBP16.01■□□□□ 0.15
SF3B3-215ENST00000577085 SLC12A1Q13621 1099 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 AUHQ13825 339 aaKnown RBP16.01■□□□□ 0.15
SF3B3-215ENST00000577085 PLEKHG6Q3KR16 790 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 PEAR1Q5VY43 1037 aaPredicted RBP16.01■□□□□ 0.15
SF3B3-215ENST00000577085 ZNF776Q68DI1 518 aaPredicted RBP16.01■□□□□ 0.15
SF3B3-215ENST00000577085 CIR1Q86X95 450 aaPredicted RBP16.01■□□□□ 0.15
SF3B3-215ENST00000577085 SLC41A1Q8IVJ1 513 aa16.01■□□□□ 0.15
SF3B3-215ENST00000577085 CCAR2Q8N163 923 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms