RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TRPM6Q9BX84 2022 aa6.99□□□□□ -1.29
VPS53-213ENST00000572334 KCNK3O14649 394 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 TBL1XO60907 577 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 SEMA4FO95754 770 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 IGLV3-25P01717 112 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 LTFP02788 710 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 DLDP09622 509 aaKnown RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 ATXN1LP0C7T5 689 aaKnown RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 CDK11BP21127 795 aaKnown RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 MATKP42679 507 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 CTSOP43234 321 aaPredicted RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 CSNK1EP49674 416 aaKnown RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 SLC8A3P57103 927 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 ZNF445P59923 1031 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 RPS24P62847 133 aaKnown RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 PITX1P78337 314 aaPredicted RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 RING1Q06587 406 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 SCAPQ12770 1279 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 FNDC3BQ53EP0 1204 aaKnown RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 SYPL2Q5VXT5 272 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 MMS22LQ6ZRQ5 1243 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 RRAGAQ7L523 313 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 PROSER1Q86XN7 944 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 MARCH9Q86YJ5 346 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 TRIM59Q8IWR1 403 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 ELOA2Q8IYF1 753 aaPredicted RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 AHI1Q8N157 1196 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 SIX6OS1Q8N1H7 587 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 FIBINQ8TAL6 211 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 DQX1Q8TE96 717 aaKnown RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 RNF139Q8WU17 664 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 BIRC7Q96CA5 298 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 HSFY1Q96LI6 401 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 CEP63Q96MT8 703 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 TIGD1Q96MW7 591 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 NT5C1BQ96P26 610 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 MED15Q96RN5 788 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 FAM129BQ96TA1 746 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 TSG101Q99816 390 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 SLC4A5Q9BY07 1137 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 IRX2Q9BZI1 471 aaPredicted RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 DNAI2Q9GZS0 605 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 PCED1AQ9H1Q7 454 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 RSPH9Q9H1X1 276 aaPredicted RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 GRPEL1Q9HAV7 217 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 METTL14Q9HCE5 456 aaKnown RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 TM9SF3Q9HD45 589 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 OSGEPQ9NPF4 335 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 ACP6Q9NPH0 428 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 TM7SF3Q9NS93 570 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 RMND1Q9NWS8 449 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 KIAA1522Q9P206 1035 aaPredicted RBP6.98□□□□□ -1.29
VPS53-213ENST00000572334 HESX1Q9UBX0 185 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 TJP2Q9UDY2 1190 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 NAALADL1Q9UQQ1 740 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 PCDHB4Q9Y5E5 795 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 PCDHGB2Q9Y5G2 931 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 ATP6V1DQ9Y5K8 247 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 SNX11Q9Y5W9 270 aa6.98□□□□□ -1.29
VPS53-213ENST00000572334 H0Y8X5 98 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 M0QYV0 167 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 WNT9AO14904 365 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 P4HA2O15460 535 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 PAPSS1O43252 624 aaPredicted RBP6.97□□□□□ -1.29
VPS53-213ENST00000572334 SIN3BO75182 1162 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 CER1O95813 267 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 WNT1P04628 370 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 ACADMP11310 421 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 CSKP41240 450 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 CTSKP43235 329 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 GRIA4P48058 902 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 MARSP56192 900 aaKnown RBP6.97□□□□□ -1.29
VPS53-213ENST00000572334 TBX4P57082 545 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 YWHAEP62258 255 aaKnown RBP6.97□□□□□ -1.29
VPS53-213ENST00000572334 GCNT1Q02742 428 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 ZBTB16Q05516 673 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 NNTQ13423 1086 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 CAMK2BQ13554 666 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 MORC3Q14149 939 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 KCNJ12Q14500 433 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 ARID5BQ14865 1188 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 SHBQ15464 509 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 TAF5Q15542 800 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 DCAF6Q58WW2 860 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 MS4A13Q5J8X5 152 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 C9orf64Q5T6V5 341 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 NUGGCQ68CJ6 796 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 DENND1BQ6P3S1 775 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 FOXR2Q6PJQ5 311 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 LRSAM1Q6UWE0 723 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 TMPRSS7Q7RTY8 843 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 TAC4Q86UU9 113 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 SCUBE3Q8IX30 993 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 COL27A1Q8IZC6 1860 aaPredicted RBP6.97□□□□□ -1.29
VPS53-213ENST00000572334 APCDD1Q8J025 514 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 CFAP52Q8N1V2 620 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 PPM1KQ8N3J5 372 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 WDTC1Q8N5D0 677 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 EHBP1Q8NDI1 1231 aa6.97□□□□□ -1.29
VPS53-213ENST00000572334 ADAM32Q8TC27 787 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms