RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CYB5D1Q6P9G0 228 aa20.83■□□□□ 0.92
CLN3-230ENST00000568076 DCLRE1AQ6PJP8 1040 aa20.83■□□□□ 0.92
CLN3-230ENST00000568076 SMC1BQ8NDV3 1235 aa20.83■□□□□ 0.92
CLN3-230ENST00000568076 SYBUQ9NX95 663 aa20.83■□□□□ 0.92
CLN3-230ENST00000568076 KLHL8Q9P2G9 620 aaPredicted RBP20.83■□□□□ 0.92
CLN3-230ENST00000568076 KRT38O76015 456 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 ALDH1A1P00352 501 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 IGLV3-25P01717 112 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 SKIP12755 728 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 PGFP49763 221 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 ACLYP53396 1101 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 EIF4EBP2Q13542 120 aaPredicted RBP20.82■□□□□ 0.92
CLN3-230ENST00000568076 TRAF7Q6Q0C0 670 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 ZNF280BQ86YH2 543 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 MTBPQ96DY7 904 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 EPAS1Q99814 870 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 MYLK2Q9H1R3 596 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 PLLPQ9Y342 182 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 PTPRDP23468 1912 aa20.82■□□□□ 0.92
CLN3-230ENST00000568076 NCAM2O15394 837 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 CKBP12277 381 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 PGAM1P18669 254 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 EPHB2P29323 1055 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 CD68P34810 354 aaPredicted RBP20.81■□□□□ 0.92
CLN3-230ENST00000568076 SERPINB4P48594 390 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 GALNT2Q10471 571 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 OVGP1Q12889 678 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 ZBTB17Q13105 803 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 MBTPS1Q14703 1052 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 CRYMQ14894 314 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 THEM5Q8N1Q8 247 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 HDAC11Q96DB2 347 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 PGLYRP2Q96PD5 576 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 NPHS2Q9NP85 383 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 NEU3Q9UQ49 428 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 ZBTB24O43167 697 aaPredicted RBP20.81■□□□□ 0.92
CLN3-230ENST00000568076 DDHD2O94830 711 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 OR4Q2P0C623 313 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 TYMPP19971 482 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 BGNP21810 368 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 GARSP41250 739 aaKnown RBP20.81■□□□□ 0.92
CLN3-230ENST00000568076 SLC5A3P53794 718 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 MARK2Q7KZI7 788 aaKnown RBP20.81■□□□□ 0.92
CLN3-230ENST00000568076 TBC1D1Q86TI0 1168 aaPredicted RBP20.81■□□□□ 0.92
CLN3-230ENST00000568076 LINC01599Q8WXQ3 324 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 APBB2Q92870 758 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 AGAP3Q96P47 875 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 SLC13A1Q9BZW2 595 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 RGS18Q9NS28 235 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 MKS1Q9NXB0 559 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 KANSL3Q9P2N6 904 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 SQORQ9Y6N5 450 aa20.81■□□□□ 0.92
CLN3-230ENST00000568076 TNFRSF10BO14763 440 aa20.8■□□□□ 0.92
CLN3-230ENST00000568076 PAX3P23760 479 aa20.8■□□□□ 0.92
CLN3-230ENST00000568076 SERPINB9P50453 376 aa20.8■□□□□ 0.92
CLN3-230ENST00000568076 KCNJ2P63252 427 aa20.8■□□□□ 0.92
CLN3-230ENST00000568076 ELF3P78545 371 aaPredicted RBP20.8■□□□□ 0.92
CLN3-230ENST00000568076 TSPY1Q01534 308 aa20.8■□□□□ 0.92
CLN3-230ENST00000568076 MAPRE1Q15691 268 aaKnown RBP20.8■□□□□ 0.92
CLN3-230ENST00000568076 OR52K1Q8NGK4 314 aa20.8■□□□□ 0.92
CLN3-230ENST00000568076 DPF3Q92784 378 aa20.8■□□□□ 0.92
CLN3-230ENST00000568076 ERP27Q96DN0 273 aa20.8■□□□□ 0.92
CLN3-230ENST00000568076 TRPV6Q9H1D0 765 aa20.8■□□□□ 0.92
CLN3-230ENST00000568076 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.79■□□□□ 0.92
CLN3-230ENST00000568076 USP12O75317 370 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 AP2A1O95782 977 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 ZNF135P52742 658 aaPredicted RBP20.79■□□□□ 0.92
CLN3-230ENST00000568076 SP3Q02447 781 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 CLLU1OSQ5K130 101 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 MAP3K21Q5TCX8 1036 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 CES3Q6UWW8 571 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 TIFABQ6ZNK6 161 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 BEND5Q7L4P6 421 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 RNF180Q86T96 592 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 CCNJLQ8IV13 435 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 RFWD2Q8NHY2 731 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 ZSCAN18Q8TBC5 510 aaPredicted RBP20.79■□□□□ 0.92
CLN3-230ENST00000568076 RNF34Q969K3 372 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 CELF6Q96J87 481 aaKnown RBP20.79■□□□□ 0.92
CLN3-230ENST00000568076 HHIPL1Q96JK4 782 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 IQCGQ9H095 443 aaKnown RBP20.79■□□□□ 0.92
CLN3-230ENST00000568076 BRD8Q9H0E9 1235 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 PCMTD2Q9NV79 361 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 PCDHB8Q9UN66 801 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 TRIM33Q9UPN9 1127 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 PATJQ8NI35 1801 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 CFAP73A6NFT4 308 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 IRAK2O43187 625 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 AOC2O75106 756 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 CABYRO75952 493 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 MX2P20592 715 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 YWHAHQ04917 246 aaPredicted RBP20.79■□□□□ 0.92
CLN3-230ENST00000568076 SMAD1Q15797 465 aaKnown RBP20.79■□□□□ 0.92
CLN3-230ENST00000568076 KCTD11Q693B1 232 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 ASRGL1Q7L266 308 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 SPATA2LQ8IUW3 424 aaPredicted RBP20.79■□□□□ 0.92
CLN3-230ENST00000568076 MLPHQ9BV36 600 aaPredicted RBP20.79■□□□□ 0.92
CLN3-230ENST00000568076 MECRQ9BV79 373 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 TSSK1BQ9BXA7 367 aa20.79■□□□□ 0.92
CLN3-230ENST00000568076 OSBPL2Q9H1P3 480 aa20.79■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms