RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 GFPT1Q06210 699 aaPredicted RBP21.45■■□□□ 1.02
CLN3-219ENST00000565778 FKBP15Q5T1M5 1219 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 MMS22LQ6ZRQ5 1243 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 RBM43Q6ZSC3 357 aaKnown RBP21.45■■□□□ 1.02
CLN3-219ENST00000565778 RABEPKQ7Z6M1 372 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 ZDHHC17Q8IUH5 632 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 TTC17Q96AE7 1141 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 LMLNQ96KR4 655 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 NAA15Q9BXJ9 866 aaKnown RBP21.45■■□□□ 1.02
CLN3-219ENST00000565778 PRSS16Q9NQE7 514 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 ANO10Q9NW15 660 aa21.45■■□□□ 1.02
CLN3-219ENST00000565778 FAM170AA1A519 330 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 ASLP04424 464 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 ADRB1P08588 477 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 SERPINF2P08697 491 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 MAOBP27338 520 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 CSKP41240 450 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 ATXN3P54252 364 aaPredicted RBP21.44■■□□□ 1.02
CLN3-219ENST00000565778 KRT31Q15323 416 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 WDR45BQ5MNZ6 344 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 CDKAL1Q5VV42 579 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 PEAR1Q5VY43 1037 aaPredicted RBP21.44■■□□□ 1.02
CLN3-219ENST00000565778 SLC26A9Q7LBE3 791 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 FAM124AQ86V42 546 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 ERICH1Q86X53 443 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 C18orf8Q96DM3 657 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 FSCN3Q9NQT6 498 aa21.44■■□□□ 1.02
CLN3-219ENST00000565778 INTS6Q9UL03 887 aaKnown RBP21.44■■□□□ 1.02
CLN3-219ENST00000565778 M0QYT0 321 aa21.43■■□□□ 1.02
CLN3-219ENST00000565778 KCNK5O95279 499 aa21.43■■□□□ 1.02
CLN3-219ENST00000565778 GNSP15586 552 aa21.43■■□□□ 1.02
CLN3-219ENST00000565778 MATKP42679 507 aa21.43■■□□□ 1.02
CLN3-219ENST00000565778 PITRM1Q5JRX3 1037 aa21.43■■□□□ 1.02
CLN3-219ENST00000565778 RABGAP1LQ5R372 815 aa21.43■■□□□ 1.02
CLN3-219ENST00000565778 ZNF397Q8NF99 534 aaPredicted RBP21.43■■□□□ 1.02
CLN3-219ENST00000565778 CADM4Q8NFZ8 388 aa21.43■■□□□ 1.02
CLN3-219ENST00000565778 GTPBP2Q9BX10 602 aaKnown RBP21.43■■□□□ 1.02
CLN3-219ENST00000565778 FBRSQ9HAH7 460 aa21.43■■□□□ 1.02
CLN3-219ENST00000565778 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.43■■□□□ 1.02
CLN3-219ENST00000565778 PLXND1Q9Y4D7 1925 aa21.43■■□□□ 1.02
CLN3-219ENST00000565778 MEI4A8MW99 385 aa21.42■■□□□ 1.02
CLN3-219ENST00000565778 DAB1O75553 588 aa21.42■■□□□ 1.02
CLN3-219ENST00000565778 DNTTP04053 509 aa21.42■■□□□ 1.02
CLN3-219ENST00000565778 CDK11BP21127 795 aaKnown RBP21.42■■□□□ 1.02
CLN3-219ENST00000565778 LAMA1P25391 3075 aa21.42■■□□□ 1.02
CLN3-219ENST00000565778 CDH5P33151 784 aaPredicted RBP21.42■■□□□ 1.02
CLN3-219ENST00000565778 KLK7P49862 253 aa21.42■■□□□ 1.02
CLN3-219ENST00000565778 N4BP2L1Q5TBK1 243 aaPredicted RBP21.42■■□□□ 1.02
CLN3-219ENST00000565778 NOP9Q86U38 636 aaKnown RBP21.42■■□□□ 1.02
CLN3-219ENST00000565778 ANKRD20A12PQ8NF67 263 aa21.42■■□□□ 1.02
CLN3-219ENST00000565778 PRMT1Q99873 361 aaKnown RBP21.42■■□□□ 1.02
CLN3-219ENST00000565778 MTG2Q9H4K7 406 aa21.42■■□□□ 1.02
CLN3-219ENST00000565778 RRN3Q9NYV6 651 aa21.42■■□□□ 1.02
CLN3-219ENST00000565778 SUSD2Q9UGT4 822 aa21.42■■□□□ 1.02
CLN3-219ENST00000565778 ERVW-1Q9UQF0 538 aa21.42■■□□□ 1.02
CLN3-219ENST00000565778 METTL12A8MUP2 240 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 F8VZ95 297 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 GFPT2O94808 682 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 IGLV3-19P01714 112 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 MMEP08473 750 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 GABRB2P47870 512 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 POLR2FP61218 127 aaKnown RBP21.41■■□□□ 1.02
CLN3-219ENST00000565778 RPS14P62263 151 aaKnown RBP21.41■■□□□ 1.02
CLN3-219ENST00000565778 ECT2LQ008S8 904 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 MTA1Q13330 715 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 STX1AQ16623 288 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 PLEKHG6Q3KR16 790 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 RNF219Q5W0B1 726 aaPredicted RBP21.41■■□□□ 1.02
CLN3-219ENST00000565778 PSAPL1Q6NUJ1 521 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 FBXL22Q6P050 247 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 CIR1Q86X95 450 aaPredicted RBP21.41■■□□□ 1.02
CLN3-219ENST00000565778 APCDD1Q8J025 514 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 CCAR2Q8N163 923 aaKnown RBP21.41■■□□□ 1.02
CLN3-219ENST00000565778 CPA5Q8WXQ8 436 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 PCMTD1Q96MG8 357 aaPredicted RBP21.41■■□□□ 1.02
CLN3-219ENST00000565778 RPRD1AQ96P16 312 aaPredicted RBP21.41■■□□□ 1.02
CLN3-219ENST00000565778 SIK2Q9H0K1 926 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 MIR1-1HGQ9H1L0 117 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 GANQ9H2C0 597 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 WDCPQ9H6R7 721 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 CAPN10Q9HC96 672 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 NLRC4Q9NPP4 1024 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 FAM207AQ9NSI2 230 aaPredicted RBP21.41■■□□□ 1.02
CLN3-219ENST00000565778 GON4LQ3T8J9 2241 aa21.41■■□□□ 1.02
CLN3-219ENST00000565778 RNASEH1O60930 286 aaKnown RBP21.4■■□□□ 1.02
CLN3-219ENST00000565778 MBD3O95983 291 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 SRPRAP08240 638 aaKnown RBP21.4■■□□□ 1.02
CLN3-219ENST00000565778 SYPP08247 313 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 CTSOP43234 321 aaPredicted RBP21.4■■□□□ 1.02
CLN3-219ENST00000565778 NOVA1P51513 510 aaKnown RBP21.4■■□□□ 1.02
CLN3-219ENST00000565778 MYL5Q02045 173 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 ZBTB16Q05516 673 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 SLC12A1Q13621 1099 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 AUHQ13825 339 aaKnown RBP21.4■■□□□ 1.02
CLN3-219ENST00000565778 FAM102AQ5T9C2 384 aaPredicted RBP21.4■■□□□ 1.02
CLN3-219ENST00000565778 TTC39BQ5VTQ0 682 aaPredicted RBP21.4■■□□□ 1.02
CLN3-219ENST00000565778 DCAF12L1Q5VU92 463 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 SND1Q7KZF4 910 aaKnown RBP eCLIP21.4■■□□□ 1.022e-7■■■□□ 14.9
CLN3-219ENST00000565778 MSANTD4Q8NCY6 345 aa21.4■■□□□ 1.02
CLN3-219ENST00000565778 DNASE2BQ8WZ79 361 aa21.4■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms