RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 BTBD1Q9H0C5 482 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 NUCKS1Q9H1E3 243 aaKnown RBP17.75■□□□□ 0.43
CLN3-216ENST00000565316 SGK2Q9HBY8 427 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 STIM2Q9P246 746 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 FNDC3AQ9Y2H6 1198 aaKnown RBP17.75■□□□□ 0.43
CLN3-216ENST00000565316 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.75■□□□□ 0.43
CLN3-216ENST00000565316 GTF3C3Q9Y5Q9 886 aa17.75■□□□□ 0.43
CLN3-216ENST00000565316 A0A1B0GVT2 93 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 SRRM3A6NNA2 597 aaPredicted RBP17.74■□□□□ 0.43
CLN3-216ENST00000565316 CAPNS1P04632 268 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 CSKP41240 450 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 CSNK1EP49674 416 aaKnown RBP17.74■□□□□ 0.43
CLN3-216ENST00000565316 STX17P56962 302 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 TTC31Q49AM3 519 aaPredicted RBP17.74■□□□□ 0.43
CLN3-216ENST00000565316 DCAF6Q58WW2 860 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 SYPL2Q5VXT5 272 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 USP30Q70CQ3 517 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 TAC4Q86UU9 113 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 BAHD1Q8TBE0 780 aaPredicted RBP17.74■□□□□ 0.43
CLN3-216ENST00000565316 ZCCHC14Q8WYQ9 949 aaKnown RBP17.74■□□□□ 0.43
CLN3-216ENST00000565316 ORAI3Q9BRQ5 295 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 TRIM62Q9BVG3 475 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 MTG2Q9H4K7 406 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 TM9SF3Q9HD45 589 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 UBE2TQ9NPD8 197 aaPredicted RBP17.74■□□□□ 0.43
CLN3-216ENST00000565316 ST7Q9NRC1 585 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 TM7SF3Q9NS93 570 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 CYTH4Q9UIA0 394 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 SCML1Q9UN30 329 aa17.74■□□□□ 0.43
CLN3-216ENST00000565316 TYW5A2RUC4 315 aaKnown RBP17.73■□□□□ 0.43
CLN3-216ENST00000565316 BIN1O00499 593 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 PAPSS1O43252 624 aaPredicted RBP17.73■□□□□ 0.43
CLN3-216ENST00000565316 GADD45BO75293 160 aaPredicted RBP17.73■□□□□ 0.43
CLN3-216ENST00000565316 IGLV3-25P01717 112 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 KRT5P13647 590 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 CD27P26842 260 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 GRIA4P48058 902 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 EIF4EBP2Q13542 120 aaPredicted RBP17.73■□□□□ 0.43
CLN3-216ENST00000565316 KIF19Q2TAC6 998 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 FSCBQ5H9T9 825 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 ENOSF1Q7L5Y1 443 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 ADAM32Q8TC27 787 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 ZNF606Q8WXB4 792 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 SNX19Q92543 992 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 FAM149B1Q96BN6 582 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 BIRC7Q96CA5 298 aa17.73■□□□□ 0.43
CLN3-216ENST00000565316 PABPC3Q9H361 631 aaKnown RBP17.73■□□□□ 0.43
CLN3-216ENST00000565316 KIAA1522Q9P206 1035 aaPredicted RBP17.73■□□□□ 0.43
CLN3-216ENST00000565316 C10orf142B7Z368 130 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 MED7O43513 233 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 SIN3BO75182 1162 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 LUC7L3O95232 432 aaKnown RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 SRPRAP08240 638 aaKnown RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 ST8SIA6P61647 398 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 CDH18Q13634 790 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 TEAD4Q15561 434 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 PITRM1Q5JRX3 1037 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 C9orf64Q5T6V5 341 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 SMYD5Q6GMV2 418 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 SLCO6A1Q86UG4 719 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 CARNMT1Q8N4J0 409 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 SETD7Q8WTS6 366 aaKnown RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 MED15Q96RN5 788 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 POPDC2Q9HBU9 364 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 XPO7Q9UIA9 1087 aaKnown RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 ERVW-1Q9UQF0 538 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 APOBEC2Q9Y235 224 aaKnown RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 ANKRD6Q9Y2G4 727 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 CABIN1Q9Y6J0 2220 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 NBEAQ8NFP9 2946 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 TARSL2A2RTX5 802 aaKnown RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 E5RJQ4 531 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 FLRT2O43155 660 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 DKK1O94907 266 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 FSBPO95073 299 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 LETM1O95202 739 aaPredicted RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 FGFR1OPO95684 399 aaKnown RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 IGHV4-34P06331 123 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 YWHAZP63104 245 aaKnown RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 ZC3H12AQ5D1E8 599 aaKnown RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 CCNI2Q6ZMN8 369 aaPredicted RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 MMS22LQ6ZRQ5 1243 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 CCDC117Q8IWD4 279 aaPredicted RBP17.72■□□□□ 0.43
CLN3-216ENST00000565316 CFAP52Q8N1V2 620 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 PNPLA1Q8N8W4 532 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 BTN2A3PQ96KV6 586 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 FAM81BQ96LP2 452 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 THAP9Q9H5L6 903 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 ADAMTS1Q9UHI8 967 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 NCKAP1Q9Y2A7 1128 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 SNX11Q9Y5W9 270 aa17.72■□□□□ 0.43
CLN3-216ENST00000565316 LAMA5O15230 3695 aa17.71■□□□□ 0.43
CLN3-216ENST00000565316 ITIH6Q6UXX5 1313 aa17.71■□□□□ 0.43
CLN3-216ENST00000565316 CAPN9O14815 690 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 RNASEH1O60930 286 aaKnown RBP17.71■□□□□ 0.42
CLN3-216ENST00000565316 TRUB2O95900 331 aaKnown RBP17.71■□□□□ 0.42
CLN3-216ENST00000565316 MOCS2O96007 188 aaPredicted RBP17.71■□□□□ 0.42
CLN3-216ENST00000565316 APOEP02649 317 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 TACR2P21452 398 aa17.71■□□□□ 0.42
CLN3-216ENST00000565316 GNA15P30679 374 aa17.71■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms