RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 GPT2Q8TD30 523 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 ZFAND2BQ8WV99 257 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 DYDC1Q8WWB3 177 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 GTF3C6Q969F1 213 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 NCLNQ969V3 563 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 FUBP1Q96AE4 644 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 RBM41Q96IZ5 413 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 HS6ST2Q96MM7 605 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 ASB2Q96Q27 587 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 SEC62Q99442 399 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 CGREF1Q99674 301 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 COQ7Q99807 217 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 GPATCH1Q9BRR8 931 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 API5Q9BZZ5 524 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 B3GNT4Q9C0J1 378 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 CCDC8Q9H0W5 538 aaPredicted RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 CRLF2Q9HC73 371 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 TMEM74BQ9NUR3 256 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 FBXO34Q9NWN3 711 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 MCM9Q9NXL9 1143 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 RNF181Q9P0P0 153 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 VPS18Q9P253 973 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 TBC1D14Q9P2M4 693 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 RUVBL1Q9Y265 456 aaKnown RBP5.37□□□□□ -1.55
VPS35-205ENST00000563984 TIMM22Q9Y584 194 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 PCDHB2Q9Y5E7 798 aa5.37□□□□□ -1.55
VPS35-205ENST00000563984 EME2A4GXA9 379 aaPredicted RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 UNC119BA6NIH7 251 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 GOLGA8SH3BPF8 625 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 L7N2F9 121 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 FZD9O00144 591 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 PSMD9O00233 223 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 VWA5AO00534 786 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 E2F3O00716 465 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 TRDMT1O14717 391 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 IKBKBO14920 756 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 AREL1O15033 823 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 ZW10O43264 779 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 RIPK2O43353 540 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 STRNO43815 780 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 TLR5O60602 858 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 ZC3H11AO75152 810 aaKnown RBP eCLIP5.36□□□□□ -1.55
VPS35-205ENST00000563984 SOCS5O75159 536 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 SPDEFO95238 335 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 POP4O95707 220 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 ATP5BP06576 529 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 S100A9P06702 114 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 HKR1P10072 659 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 EGR2P11161 476 aaPredicted RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 SCG2P13521 617 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 CSF2RAP15509 400 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 POLR2EP19388 210 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 S100A1P23297 94 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 ATP5F1P24539 256 aaPredicted RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 EEF1GP26641 437 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 ANXA13P27216 316 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 AP3M2P53677 418 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 ALDH18A1P54886 795 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 VCPP55072 806 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 KRTAP10-11P60412 298 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 SSTP61278 116 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 COG7P83436 770 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 OCA2Q04671 838 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 GNA13Q14344 377 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 MXD4Q14582 209 aaPredicted RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 STK38Q15208 465 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 CCDC57Q2TAC2 916 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 MAJINQ3KP22 176 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 CCDC153Q494R4 210 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 FUT11Q495W5 492 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 GPATCH4Q5T3I0 446 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 RNASEH2BQ5TBB1 312 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 HECTD2Q5U5R9 776 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 B3GNTL1Q67FW5 361 aaPredicted RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 GPR139Q6DWJ6 353 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 RAB12Q6IQ22 244 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 TLDC1Q6P9B6 456 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 FOXR2Q6PJQ5 311 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 B3GNT6Q6ZMB0 384 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 APLFQ8IW19 511 aaPredicted RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 BEND2Q8NDZ0 799 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 TOR1AIP2Q8NFQ8 470 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 LPIN2Q92539 896 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 RAPGEF5Q92565 580 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 LTV1Q96GA3 475 aaPredicted RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 SNX27Q96L92 541 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 TEKT5Q96M29 485 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 TTC25Q96NG3 672 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 ALS2CR12Q96Q35 445 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 NTPCRQ9BSD7 190 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 NT5C3AQ9H0P0 336 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 C11orf54Q9H0W9 315 aaPredicted RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 GSTO2Q9H4Y5 243 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 KIF9Q9HAQ2 790 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 XAB2Q9HCS7 855 aaKnown RBP5.36□□□□□ -1.55
VPS35-205ENST00000563984 HPS4Q9NQG7 708 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 ZNF446Q9NWS9 450 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 SYBUQ9NX95 663 aa5.36□□□□□ -1.55
VPS35-205ENST00000563984 MIS18AQ9NYP9 233 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms