RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 OTUB2Q96DC9 234 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 RPRD1AQ96P16 312 aaPredicted RBP17.11■□□□□ 0.33
VPS4A-202ENST00000562754 FAM83CQ9BQN1 747 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 HPS4Q9NQG7 708 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 ARHGEF4Q9NR80 690 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 MPP6Q9NZW5 540 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 PPARGC1AQ9UBK2 798 aaKnown RBP17.11■□□□□ 0.33
VPS4A-202ENST00000562754 MFHAS1Q9Y4C4 1052 aa17.11■□□□□ 0.33
VPS4A-202ENST00000562754 LOC730098B7Z3J9 87 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 TUBB4AP04350 444 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 CYP17A1P05093 508 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 KRT10P13645 584 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 AMPD1P23109 780 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 EPHB2P29323 1055 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 HTR7P34969 479 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 CHKAP35790 457 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 COPS2P61201 443 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 ADCY2Q08462 1091 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 ODF2Q5BJF6 829 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 ANKRD20A8PQ5CZ79 823 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 TFDP3Q5H9I0 405 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 RWDD4Q6NW29 188 aaKnown RBP17.1■□□□□ 0.33
VPS4A-202ENST00000562754 LRRC31Q6UY01 552 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 TPGS1Q6ZTW0 290 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 TMEM25Q86YD3 366 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 PLCD3Q8N3E9 789 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 HJURPQ8NCD3 748 aaPredicted RBP17.1■□□□□ 0.33
VPS4A-202ENST00000562754 RNF157Q96PX1 679 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 OSBPL8Q9BZF1 889 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 ETNK2Q9NVF9 386 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 THG1LQ9NWX6 298 aaKnown RBP17.1■□□□□ 0.33
VPS4A-202ENST00000562754 ZNF212Q9UDV6 495 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 LIMD1Q9UGP4 676 aa17.1■□□□□ 0.33
VPS4A-202ENST00000562754 TICRRQ7Z2Z1 1910 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 PRUNE2Q8WUY3 3088 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 DCLK1O15075 740 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 ZNF185O15231 689 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 TBL1XO60907 577 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 TCP1P17987 556 aaKnown RBP17.09■□□□□ 0.33
VPS4A-202ENST00000562754 ERCC2P18074 760 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 GDI1P31150 447 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 TNK2Q07912 1038 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 PDGFRLQ15198 375 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 AAK1Q2M2I8 961 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 RABGAP1LQ5R372 815 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 LY6G5CQ5SRR4 150 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 SEL1L2Q5TEA6 688 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 FYB2Q5VWT5 728 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 RNF43Q68DV7 783 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 RHBDF2Q6PJF5 856 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 NLRP14Q86W24 1093 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 RFX6Q8HWS3 928 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 YAF2Q8IY57 180 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 ADGRG2Q8IZP9 1017 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 ZNF592Q92610 1267 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 IRF7Q92985 503 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 BHMTQ93088 406 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 PBKQ96KB5 322 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 HEMGNQ9BXL5 484 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 ZYG11BQ9C0D3 744 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 EBF3Q9H4W6 596 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 SPHK2Q9NRA0 654 aa17.09■□□□□ 0.33
VPS4A-202ENST00000562754 MYO10Q9HD67 2058 aa17.08■□□□□ 0.33
VPS4A-202ENST00000562754 TCRBV7S2A1N4TA0A589 114 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 ARNTLO00327 626 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 CHADO15335 359 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 FGF10O15520 208 aaPredicted RBP17.08■□□□□ 0.32
VPS4A-202ENST00000562754 CEP104O60308 925 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 PENKP01210 267 aaPredicted RBP17.08■□□□□ 0.32
VPS4A-202ENST00000562754 ASGR2P07307 311 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 PRLRP16471 622 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 RHOQP17081 205 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 HOXD9P28356 352 aaPredicted RBP17.08■□□□□ 0.32
VPS4A-202ENST00000562754 ZP2Q05996 745 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 DHCR24Q15392 516 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 GAB4Q2WGN9 574 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 MPPE1Q53F39 396 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 TTC39BQ5VTQ0 682 aaPredicted RBP17.08■□□□□ 0.32
VPS4A-202ENST00000562754 KAZNQ674X7 775 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 SLC9A4Q6AI14 798 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 TFAP2DQ7Z6R9 452 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 RASGEF1CQ8N431 466 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 NPWQ8N729 165 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 RTL3Q8N8U3 475 aaKnown RBP17.08■□□□□ 0.32
VPS4A-202ENST00000562754 TMA16Q96EY4 203 aaKnown RBP17.08■□□□□ 0.32
VPS4A-202ENST00000562754 MS4A14Q96JA4 679 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 TRMT61BQ9BVS5 477 aaKnown RBP17.08■□□□□ 0.32
VPS4A-202ENST00000562754 KCNK12Q9HB15 430 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 NDFIP2Q9NV92 336 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 TMEM248Q9NWD8 314 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 PLK2Q9NYY3 685 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 SMARCAL1Q9NZC9 954 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 MARK1Q9P0L2 795 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 STIM2Q9P246 746 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 SAR1BQ9Y6B6 198 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 XIRP2A4UGR9 3374 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 CHD5Q8TDI0 1954 aa17.08■□□□□ 0.32
VPS4A-202ENST00000562754 KIAA1549LQ6ZVL6 1849 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 A0A1B0GVM2 712 aa17.07■□□□□ 0.32
VPS4A-202ENST00000562754 TCAF2A6NFQ2 919 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms