RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 UBAP2Q5T6F2 1119 aaKnown RBP21.88■■□□□ 1.09
CLN3-209ENST00000561689 ALS2CLQ60I27 953 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 KLHDC10Q6PID8 442 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 PPIL6Q8IXY8 311 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 ZCCHC9Q8N567 271 aaKnown RBP21.88■■□□□ 1.09
CLN3-209ENST00000561689 PRCCQ92733 491 aaPredicted RBP21.88■■□□□ 1.09
CLN3-209ENST00000561689 ABHD8Q96I13 439 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 KLC2Q9H0B6 622 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 CATSPERBQ9H7T0 1116 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 RAB6BQ9NRW1 208 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 GKN1Q9NS71 199 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 NDFIP2Q9NV92 336 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 SEPT10Q9P0V9 454 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 TCRBV7S3A2A0A539 114 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 C5orf67F2Z3F1 127 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 FGF10O15520 208 aaPredicted RBP21.88■■□□□ 1.09
CLN3-209ENST00000561689 PPP3CCP48454 512 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 IRAK1P51617 712 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 GAD2Q05329 585 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 FAXCQ5TGI0 409 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 NUGGCQ68CJ6 796 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 CCDC149Q6ZUS6 474 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 PCGF5Q86SE9 256 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 ZNF683Q8IZ20 524 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 DEPDC1BQ8WUY9 529 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 CEP41Q9BYV8 373 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 IL21Q9HBE4 155 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 PLAAQ9Y263 795 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 RAD54BQ9Y620 910 aa21.88■■□□□ 1.09
CLN3-209ENST00000561689 GOLGA6L7A0A1B0GV03 622 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 CCDC85CA6NKD9 419 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 GCATO75600 419 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 OAS1P00973 400 aaKnown RBP21.87■■□□□ 1.09
CLN3-209ENST00000561689 F11P03951 625 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 GALNT2Q10471 571 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 HS6ST3Q8IZP7 471 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 NAT8LQ8N9F0 302 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 EPB41L4BQ9H329 900 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 TRPC7Q9HCX4 862 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 SHOC2Q9UQ13 582 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 C5orf60A6NFR6 353 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 RNF103O00237 685 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 MX2P20592 715 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 UBE3AQ05086 875 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 NADSYN1Q6IA69 706 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 FBXL22Q6P050 247 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 LRRC31Q6UY01 552 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 OR2W6PQ8NHA6 318 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 SLC22A17Q8WUG5 538 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 IGSF8Q969P0 613 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 CYP2S1Q96SQ9 504 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 RBM15Q96T37 977 aaKnown RBP eCLIP21.87■■□□□ 1.09
CLN3-209ENST00000561689 TSPYL1Q9H0U9 437 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 PABPC3Q9H361 631 aaKnown RBP21.87■■□□□ 1.09
CLN3-209ENST00000561689 ASB3Q9Y575 518 aa21.87■■□□□ 1.09
CLN3-209ENST00000561689 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.86■■□□□ 1.09
CLN3-209ENST00000561689 H3BQF6 201 aa21.86■■□□□ 1.09
CLN3-209ENST00000561689 KCNK1O00180 336 aa21.86■■□□□ 1.09
CLN3-209ENST00000561689 NCAM2O15394 837 aa21.86■■□□□ 1.09
CLN3-209ENST00000561689 TMEM63AO94886 807 aa21.86■■□□□ 1.09
CLN3-209ENST00000561689 METTL18O95568 372 aa21.86■■□□□ 1.09
CLN3-209ENST00000561689 GARSP41250 739 aaKnown RBP21.86■■□□□ 1.09
CLN3-209ENST00000561689 CLCN4P51793 760 aa21.86■■□□□ 1.09
CLN3-209ENST00000561689 TXNDC8Q6A555 127 aa21.86■■□□□ 1.09
CLN3-209ENST00000561689 TFAP2DQ7Z6R9 452 aa21.86■■□□□ 1.09
CLN3-209ENST00000561689 RTL3Q8N8U3 475 aaKnown RBP21.86■■□□□ 1.09
CLN3-209ENST00000561689 SLC22A12Q96S37 553 aa21.86■■□□□ 1.09
CLN3-209ENST00000561689 PRMT1Q99873 361 aaKnown RBP21.86■■□□□ 1.09
CLN3-209ENST00000561689 SMPD4Q9NXE4 827 aa21.86■■□□□ 1.09
CLN3-209ENST00000561689 DFFAO00273 331 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 LPXNO60711 386 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 CNTN5O94779 1100 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 RB1P06400 928 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 GABRR2P28476 465 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 HARS2P49590 506 aaKnown RBP21.85■■□□□ 1.09
CLN3-209ENST00000561689 COG7P83436 770 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 PPIDQ08752 370 aaKnown RBP21.85■■□□□ 1.09
CLN3-209ENST00000561689 GPS2Q13227 327 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 ALFQ53S48 1182 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 ANKRD20A2Q5SQ80 823 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 ANKRD20A1Q5TYW2 823 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 ANKRD20A3Q5VUR7 823 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 ARHGEF18Q6ZSZ5 1173 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 CHSY1Q86X52 802 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 ARHGAP12Q8IWW6 846 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 MYEOVQ96EZ4 313 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 RUFY1Q96T51 708 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 ETNK1Q9HBU6 452 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 CEP290O15078 2479 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 A0A0A0MRY4 1105 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 F5H423 210 aaPredicted RBP21.85■■□□□ 1.09
CLN3-209ENST00000561689 NDC80O14777 642 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 CCL16O15467 120 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 IRF1P10914 325 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 PBX2P40425 430 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 WASHC5Q12768 1159 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 PABPC1LQ4VXU2 614 aaKnown RBP21.85■■□□□ 1.09
CLN3-209ENST00000561689 GAREM2Q75VX8 874 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 NLRP14Q86W24 1093 aa21.85■■□□□ 1.09
CLN3-209ENST00000561689 DENND1CQ8IV53 801 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms