RNA–Protein interactions for RNA: ENST00000561436.1

HERC1-215, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, human

TSL 4

Gene HERC1, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERC1-215	ENST00000561436	CES2	O00748	559 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	LARGE1	O95461	756 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	NPS	P0C0P6	89 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	NR2F6	P10588	404 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	VEGFA	P15692	232 aa	Predicted RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	PAX3	P23760	479 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	CST5	P28325	142 aa	Predicted RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	HOXC9	P31274	260 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	GK	P32189	559 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	AMPH	P49418	695 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	BFSP2	Q13515	415 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	ACOX1	Q15067	660 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	TAF5	Q15542	800 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	LY6K	Q17RY6	165 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	FAM153C	Q494X1	144 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	JMJD6	Q6NYC1	403 aa	Predicted RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	PARS2	Q7L3T8	475 aa	Known RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	RD3	Q7Z3Z2	195 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	ZNF804A	Q7Z570	1209 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	C16orf71	Q8IYS4	520 aa	Predicted RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	BOLL	Q8N9W6	283 aa	Known RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	ABHD11	Q8NFV4	315 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	OR6Y1	Q8NGX8	325 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	STT3B	Q8TCJ2	826 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	SPPL3	Q8TCT6	385 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	SDCCAG3	Q96C92	435 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	FAR2	Q96K12	515 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	TBATA	Q96M53	351 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	TRAPPC9	Q96Q05	1148 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	WDR24	Q96S15	920 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	HAPLN3	Q96S86	360 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	PYM1	Q9BRP8	204 aa	Known RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	CINP	Q9BW66	212 aa	Predicted RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	PABPC3	Q9H361	631 aa	Known RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	TAF1D	Q9H5J8	278 aa	Predicted RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	PRDM8	Q9NQV8	689 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	TMLHE	Q9NVH6	421 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	NDUFAF4	Q9P032	175 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	ANAPC4	Q9UJX5	808 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	AMFR	Q9UKV5	643 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	GPR52	Q9Y2T5	361 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	UBE2J1	Q9Y385	318 aa	Predicted RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	PEAK1	Q9H792	1746 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	PARP4	Q9UKK3	1724 aa	Known RBP	4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	TRPM1	Q7Z4N2	1603 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	IGSF1	Q8N6C5	1336 aa		4.21	□□□□□ -1.74
HERC1-215	ENST00000561436	CD163L1	Q9NR16	1453 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	ROCK2	O75116	1388 aa	Known RBP	4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	PALLD	Q8WX93	1383 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	LINC00473	A8K010	186 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	HMGB1P1	B2RPK0	211 aa	Predicted RBP	4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	GCOM1	H8Y6P7	765 aa	Predicted RBP	4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	PMPCB	O75439	489 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	C1QL1	O75973	258 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	VNN1	O95497	513 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	ADRA1D	P25100	572 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	ADD2	P35612	726 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	SEMA3B	Q13214	749 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	TBRG1	Q3YBR2	411 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	TMEM196	Q5HYL7	178 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	FBXO47	Q5MNV8	452 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	TSTD2	Q5T7W7	516 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	STRIP1	Q5VSL9	837 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	LIN54	Q6MZP7	749 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	CCDC144NL	Q6NUI1	221 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	ANKRD16	Q6P6B7	361 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	MMS22L	Q6ZRQ5	1243 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	PTCHD4	Q6ZW05	846 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	AMIGO2	Q86SJ2	522 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	TRABD2A	Q86V40	505 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	C2CD5	Q86YS7	1000 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	FTSJ3	Q8IY81	847 aa	Known RBP	4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	CLASRP	Q8N2M8	674 aa	Known RBP	4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	HMGB4	Q8WW32	186 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	GOLGA1	Q92805	767 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	USP13	Q92995	863 aa	Predicted RBP	4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	PDLIM2	Q96JY6	352 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	UBA5	Q9GZZ9	404 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	ITM2C	Q9NQX7	267 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	RRN3	Q9NYV6	651 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	BAG5	Q9UL15	447 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	SCAF8	Q9UPN6	1271 aa	Known RBP	4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	LRRFIP2	Q9Y608	721 aa	Known RBP	4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	LRRC37A3	O60309	1634 aa		4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	SMG6	Q86US8	1419 aa	Known RBP	4.2	□□□□□ -1.74
HERC1-215	ENST00000561436	CASZ1	Q86V15	1759 aa		4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	INSR	P06213	1382 aa		4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	NUP188	Q5SRE5	1749 aa		4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	ABCA3	Q99758	1704 aa		4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	AGPS	O00116	658 aa		4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	EIF3F	O00303	357 aa	Predicted RBP	4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	PPP6R2	O75170	966 aa		4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	TJP3	O95049	919 aa		4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	SLC3A2	P08195	630 aa	Known RBP	4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	HSP90AB1	P08238	724 aa	Known RBP	4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	EBLN1	P0CF75	366 aa		4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	MYCL	P12524	364 aa	Predicted RBP	4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	GYS1	P13807	737 aa		4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	KLRK1	P26718	216 aa		4.19	□□□□□ -1.74
HERC1-215	ENST00000561436	SERPINA4	P29622	427 aa		4.19	□□□□□ -1.74

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