RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 SDE2Q6IQ49 451 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 ALKBH5Q6P6C2 394 aaKnown RBP14.6□□□□□ -0.07
LDLR-213ENST00000560502 TRIM72Q6ZMU5 477 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 TPGS1Q6ZTW0 290 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 HDDC3Q8N4P3 179 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 ZNF276Q8N554 614 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 OR2I1PQ8NGU4 316 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 UBE2Q2Q8WVN8 375 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 ZCCHC14Q8WYQ9 949 aaKnown RBP14.6□□□□□ -0.07
LDLR-213ENST00000560502 TATDN2Q93075 761 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 ZNF419Q96HQ0 510 aaPredicted RBP14.6□□□□□ -0.07
LDLR-213ENST00000560502 MRGPRX1Q96LB2 322 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 HSPA12BQ96MM6 686 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 AGPAT1Q99943 283 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 SLC6A17Q9H1V8 727 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 CYP3A43Q9HB55 503 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 CACNA2D2Q9NY47 1150 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 NOCTQ9UK39 431 aaKnown RBP14.6□□□□□ -0.07
LDLR-213ENST00000560502 KLK13Q9UKR3 277 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 RAD54BQ9Y620 910 aa14.6□□□□□ -0.07
LDLR-213ENST00000560502 A0A1W2PQH9 124 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 DDX3XO00571 662 aaKnown RBP eCLIP14.59□□□□□ -0.078e-9■□□□□ 10
LDLR-213ENST00000560502 RARGP13631 454 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 CYP11B1P15538 503 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 ATXN3P54252 364 aaPredicted RBP14.59□□□□□ -0.07
LDLR-213ENST00000560502 CDR2Q01850 454 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 SYT10Q6XYQ8 523 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 SCD5Q86SK9 330 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 UBR7Q8N806 425 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 TRIM58Q8NG06 486 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 KAT5Q92993 513 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 ALS2CR12Q96Q35 445 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 APOBEC3GQ9HC16 384 aaKnown RBP14.59□□□□□ -0.07
LDLR-213ENST00000560502 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.59□□□□□ -0.072e-6■■■■■ 35.7
LDLR-213ENST00000560502 DNAI1Q9UI46 699 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 DNMT3LQ9UJW3 386 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 NUDT5Q9UKK9 219 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 SLC27A6Q9Y2P4 619 aa14.59□□□□□ -0.07
LDLR-213ENST00000560502 MUC22E2RYF6 1773 aaPredicted RBP14.58□□□□□ -0.08
LDLR-213ENST00000560502 H0Y626 953 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 ZBTB24O43167 697 aaPredicted RBP14.58□□□□□ -0.08
LDLR-213ENST00000560502 CILPO75339 1184 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 STC2O76061 302 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 TRIM16O95361 564 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 PENKP01210 267 aaPredicted RBP14.58□□□□□ -0.08
LDLR-213ENST00000560502 KLKB1P03952 638 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 H2AFZP0C0S5 128 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 PNMA6AP0CW24 399 aaPredicted RBP14.58□□□□□ -0.08
LDLR-213ENST00000560502 KRT5P13647 590 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 ACO1P21399 889 aaKnown RBP14.58□□□□□ -0.08
LDLR-213ENST00000560502 CASQ1P31415 396 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 USP8P40818 1118 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 PLA2G4AP47712 749 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 ZNF132P52740 706 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 ENPP2Q13822 863 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 H2AFVQ71UI9 128 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 RAB44Q7Z6P3 723 aaPredicted RBP14.58□□□□□ -0.08
LDLR-213ENST00000560502 METTL3Q86U44 580 aaKnown RBP14.58□□□□□ -0.08
LDLR-213ENST00000560502 ERLEC1Q96DZ1 483 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 CYFIP2Q96F07 1278 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 NT5C1AQ9BXI3 368 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 GUCA1BQ9UMX6 200 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 USP3Q9Y6I4 520 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 STON1Q9Y6Q2 735 aa14.58□□□□□ -0.08
LDLR-213ENST00000560502 DSPP15924 2871 aaKnown RBP14.58□□□□□ -0.08
LDLR-213ENST00000560502 FASNP49327 2511 aaKnown RBP14.57□□□□□ -0.08
LDLR-213ENST00000560502 PLXNB3Q9ULL4 1909 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 CTAGE9A4FU28 777 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 WASH3PC4AMC7 463 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 CAPNS1P04632 268 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 SYPP08247 313 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 TMEM253P0C7T8 217 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 PSEN1P49768 467 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 SLC14A1Q13336 389 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 HNRNPDQ14103 355 aaKnown RBP14.57□□□□□ -0.08
LDLR-213ENST00000560502 TCEAL1Q15170 157 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 ZNF423Q2M1K9 1284 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 ZNF569Q5MCW4 686 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 C10orf120Q5SQS8 335 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 FYB2Q5VWT5 728 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 NOP9Q86U38 636 aaKnown RBP14.57□□□□□ -0.08
LDLR-213ENST00000560502 FOXJ1Q92949 421 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 TRIM11Q96F44 468 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 NOX5Q96PH1 765 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 DNAI2Q9GZS0 605 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 LACRTQ9GZZ8 138 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 PLK2Q9NYY3 685 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 CLIC5Q9NZA1 410 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 USP36Q9P275 1121 aaKnown RBP14.57□□□□□ -0.08
LDLR-213ENST00000560502 SUSD2Q9UGT4 822 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 PCDHB4Q9Y5E5 795 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 DMXL2Q8TDJ6 3036 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 KNL1Q8NG31 2342 aa14.57□□□□□ -0.08
LDLR-213ENST00000560502 PTPRBP23467 1997 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 ANKRD62A6NC57 917 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 RCCD1A6NED2 376 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 NPC1O15118 1278 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 RTN2O75298 545 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 PAEPP09466 180 aa14.56□□□□□ -0.08
LDLR-213ENST00000560502 CD6P30203 668 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms