RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 A0A1W2PRU2 124 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 TARSL2A2RTX5 802 aaKnown RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 CFAP69A5D8W1 941 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 C2orf78A6NCI8 922 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 HACD1B0YJ81 288 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 E9PAM4 449 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 H7C0C1 242 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 ARHGAP33O14559 1287 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 PPP1R12AO14974 1030 aaPredicted RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 CTIFO43310 598 aaKnown RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 ACSL4O60488 711 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 STC2O76061 302 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 LRIG2O94898 1065 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 ECEL1O95672 775 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 OLFM2O95897 454 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 IGLV3-27P01718 113 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 CD48P09326 243 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 GOT1P17174 413 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 ERCC2P18074 760 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 AMPD1P23109 780 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 IL4RP24394 825 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 CORO1AP31146 461 aaKnown RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 GTF2F1P35269 517 aaKnown RBP eCLIP6.63□□□□□ -1.35
SPG11-221ENST00000560299 CHKAP35790 457 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 COILP38432 576 aaPredicted RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 ATP5OP48047 213 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 EIF3EP60228 445 aaKnown RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 DYNLT1P63172 113 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 DR1Q01658 176 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 ZP2Q05996 745 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 DLX2Q07687 328 aaPredicted RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 SEMA3BQ13214 749 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 XRCC4Q13426 336 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 AUHQ13825 339 aaKnown RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 BYSLQ13895 437 aaKnown RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 PDK1Q15118 436 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 PPP1R7Q15435 360 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 CA9Q16790 459 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 MS4A13Q5J8X5 152 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 ADGRF1Q5T601 910 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 DENND4CQ5VZ89 1909 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 SLC9A4Q6AI14 798 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 PTCRAQ6ISU1 281 aaPredicted RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 OTOP3Q7RTS5 596 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 GRASPQ7Z6J2 395 aaPredicted RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 TMEM150AQ86TG1 271 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 CHSY1Q86X52 802 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 TMC8Q8IU68 726 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 LRRC49Q8IUZ0 686 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 CCDC117Q8IWD4 279 aaPredicted RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 CMTM8Q8IZV2 173 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 PYROXD2Q8N2H3 581 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 PLD5Q8N7P1 536 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 ARL14EPQ8N8R7 260 aaPredicted RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 PRELID2Q8N945 189 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 PCDH19Q8TAB3 1148 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 C1orf54Q8WWF1 131 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 RSAD2Q8WXG1 361 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 TSC1Q92574 1164 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 ZNF707Q96C28 371 aaPredicted RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 CCDC114Q96M63 670 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 ZYG11BQ9C0D3 744 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 BRD8Q9H0E9 1235 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 RNF38Q9H0F5 515 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 DDX47Q9H0S4 455 aaKnown RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 ARHGEF4Q9NR80 690 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 GDE1Q9NZC3 331 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 SMARCAL1Q9NZC9 954 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 EPS15L1Q9UBC2 864 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 DNMT3BQ9UBC3 853 aaKnown RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 PPARGC1AQ9UBK2 798 aaKnown RBP6.63□□□□□ -1.35
SPG11-221ENST00000560299 NR2E1Q9Y466 385 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 HEY1Q9Y5J3 304 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 CPQQ9Y646 472 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 HS3ST4Q9Y661 456 aa6.63□□□□□ -1.35
SPG11-221ENST00000560299 UQCRHLA0A096LP55 91 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 TCRBV7S2A1N4TA0A589 114 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 E2F8A0AVK6 867 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 WASH4PA8MWX3 477 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 SGK1O00141 431 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 SLC9A3R1O14745 358 aaPredicted RBP6.62□□□□□ -1.35
SPG11-221ENST00000560299 MTSS1O43312 755 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 LIASO43766 372 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 STK10O94804 968 aaKnown RBP6.62□□□□□ -1.35
SPG11-221ENST00000560299 CYBBP04839 570 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 ITGAVP06756 1048 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 UQCRHP07919 91 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 RHOXF2BP0C7M4 288 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 RBP3P10745 1247 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 IRF1P10914 325 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 RHOQP17081 205 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 TACR2P21452 398 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 HOXC13P31276 330 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 KCNQ1P51787 676 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 VCPP55072 806 aaKnown RBP6.62□□□□□ -1.35
SPG11-221ENST00000560299 CYP4F8P98187 520 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 OTUD4Q01804 1114 aaKnown RBP6.62□□□□□ -1.35
SPG11-221ENST00000560299 SNX1Q13596 522 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 DPYSQ14117 519 aa6.62□□□□□ -1.35
SPG11-221ENST00000560299 PAFAH1B3Q15102 231 aaKnown RBP6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms