RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 DLATP10515 647 aaKnown RBP5.41□□□□□ -1.54
LDLR-209ENST00000558528 SRFP11831 508 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ARF4P18085 180 aaPredicted RBP5.41□□□□□ -1.54
LDLR-209ENST00000558528 PNPLA4P41247 253 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 GCLMP48507 274 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ACOT2P49753 483 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ARL4CP56559 192 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 POLR2FP61218 127 aaKnown RBP5.41□□□□□ -1.54
LDLR-209ENST00000558528 GCNT1Q02742 428 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 KLHL30Q0D2K2 578 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 KCNMA1Q12791 1236 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 DUSP4Q13115 394 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 LAPTM5Q13571 262 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 SPIDRQ14159 915 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 STARD3Q14849 445 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 LAPTM4AQ15012 233 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 SHHQ15465 462 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ASIC2Q16515 512 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ZACNQ401N2 412 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 CT83Q5H943 113 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 C9orf50Q5SZB4 431 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 MBLAC2Q68D91 279 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 SLC39A4Q6P5W5 647 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 PDXDC1Q6P996 788 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 TRIM65Q6PJ69 517 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 RRAGAQ7L523 313 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 CBWD2Q8IUF1 395 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 SYTL1Q8IYJ3 562 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 THNSL1Q8IYQ7 743 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 MFSD4AQ8N468 514 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ZNF527Q8NB42 609 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 BEST2Q8NFU1 509 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 UHMK1Q8TAS1 419 aaKnown RBP5.41□□□□□ -1.54
LDLR-209ENST00000558528 KIAA1524Q8TCG1 905 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 WHAMMQ8TF30 809 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 SAAL1Q96ER3 474 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 TMEM120AQ9BXJ8 343 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 FTHL17Q9BXU8 183 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ACE2Q9BYF1 805 aaPredicted RBP5.41□□□□□ -1.54
LDLR-209ENST00000558528 TTYH3Q9C0H2 523 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 TMEM117Q9H0C3 514 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 INTS2Q9H0H0 1204 aaKnown RBP5.41□□□□□ -1.54
LDLR-209ENST00000558528 FAM207AQ9NSI2 230 aaPredicted RBP5.41□□□□□ -1.54
LDLR-209ENST00000558528 AGPAT5Q9NUQ2 364 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 SLC38A7Q9NVC3 462 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 DNAJC12Q9UKB3 198 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 DSEQ9UL01 958 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 TCFL5Q9UL49 500 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 OGDHLQ9ULD0 1010 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 GINS2Q9Y248 185 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 C2CD2Q9Y426 696 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 CDY2AQ9Y6F7 541 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 EPN1Q9Y6I3 576 aaPredicted RBP5.41□□□□□ -1.54
LDLR-209ENST00000558528 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.41□□□□□ -1.54
LDLR-209ENST00000558528 NUMBLQ9Y6R0 609 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 X6R8D5 127 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 ZNF318Q5VUA4 2279 aa5.41□□□□□ -1.54
LDLR-209ENST00000558528 COL11A1P12107 1806 aaPredicted RBP5.41□□□□□ -1.54
LDLR-209ENST00000558528 TPRP12270 2363 aaKnown RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 MYO15AQ9UKN7 3530 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 A0A1W2PQ45 241 aaPredicted RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 A0A1W2PQY0 241 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 MYADML2A6NDP7 307 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 LRRIQ3A6PVS8 624 aaPredicted RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 ISM1B1AKI9 464 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 EIF3CLB5ME19 914 aaKnown RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 PI4K2BG5E9Z4 385 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 ST8SIA5O15466 376 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 FFAR2O15552 330 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 PHGDHO43175 533 aaKnown RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 KRT86O43790 486 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 AKR1B10O60218 316 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 FGF18O76093 207 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 CBX7O95931 251 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 DHRS4L1P0CG22 281 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 TRIM49P0CI25 452 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 TRIM49CP0CI26 452 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 HARSP12081 509 aaKnown RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 CYP3A5P20815 502 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 AMPD1P23109 780 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 THPOP40225 353 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 PRKCIP41743 596 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 PIK3CAP42336 1068 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 STT3AP46977 705 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 MAPK10P53779 464 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 RBP5P82980 135 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 CCZ1BP86790 482 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 CCZ1P86791 482 aaPredicted RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 PPP3CAQ08209 521 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 MYO1EQ12965 1108 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 PRKG2Q13237 762 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 TAF12Q16514 161 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 EPC2Q52LR7 807 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 TDRD12Q587J7 1177 aaKnown RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 MROH9Q5TGP6 573 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 TWF2Q6IBS0 349 aaKnown RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 RETSATQ6NUM9 610 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 CRELD2Q6UXH1 353 aaPredicted RBP5.4□□□□□ -1.54
LDLR-209ENST00000558528 C4orf50Q6ZRC1 276 aa5.4□□□□□ -1.54
LDLR-209ENST00000558528 C15orf39Q6ZRI6 1047 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms