RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CXorf49A8MYA2 514 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 DCLK1O15075 740 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 F9P00740 461 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 POLBP06746 335 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 DLDP09622 509 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 MX2P20592 715 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 DNAJB2P25686 324 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 PCSK1P29120 753 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TKTL1P51854 596 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TBX4P57082 545 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TPI1P60174 286 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 MRPS6P82932 125 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 NIPAL4Q0D2K0 466 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 E2F5Q15329 346 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 INSCQ1MX18 579 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 MDH1BQ5I0G3 518 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 SYCP2LQ5T4T6 812 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 ITPRIPL1Q6GPH6 555 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 CASC4Q6P4E1 433 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 CLEC20AQ6ZU45 233 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 RFX8Q6ZV50 586 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 METTL3Q86U44 580 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 NDUFAF2Q8N183 169 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 DDX51Q8N8A6 666 aaKnown RBP eCLIP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 RFWD2Q8NHY2 731 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TMEM40Q8WWA1 233 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 IRGQQ8WZA9 623 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 UPF1Q92900 1129 aaKnown RBP eCLIP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 PTPRN2Q92932 1015 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 SLC7A6OSQ96CW6 309 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 P2RY11Q96G91 374 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 NSL1Q96IY1 281 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 ASB16Q96NS5 453 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 VAT1Q99536 393 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 APBA2Q99767 749 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 LPIN3Q9BQK8 851 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 SYT15Q9BQS2 421 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 TBC1D10AQ9BXI6 508 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 MMADHCQ9H3L0 296 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 PLAC1Q9HBJ0 212 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 PCDH12Q9NPG4 1184 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 KRT82Q9NSB4 513 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 PCMTD2Q9NV79 361 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 HEY2Q9UBP5 337 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 DCDC2Q9UHG0 476 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 GJD2Q9UKL4 321 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 CDH9Q9ULB4 789 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 G3BP2Q9UN86 482 aaKnown RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.47□□□□□ -1.21
VPS13C-206ENST00000558338 C15orf41Q9Y2V0 281 aa7.47□□□□□ -1.21
VPS13C-206ENST00000558338 PTGESO14684 152 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 PSMD3O43242 534 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 HCRTO43612 131 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 LILRB3O75022 631 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 PIAS1O75925 651 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 BPGMP07738 259 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 T-ENOLP0DO92 83 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 RPL9P32969 192 aaKnown RBP7.46□□□□□ -1.22
VPS13C-206ENST00000558338 CYP2C18P33260 490 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 CCNG1P51959 295 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 DAOAP59103 153 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 COG7P83436 770 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 SOX4Q06945 474 aaPredicted RBP7.46□□□□□ -1.22
VPS13C-206ENST00000558338 OVGP1Q12889 678 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 CRYMQ14894 314 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 CHI3L2Q15782 390 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 FSCN1Q16658 493 aaKnown RBP7.46□□□□□ -1.22
VPS13C-206ENST00000558338 CTC1Q2NKJ3 1217 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 OTUD1Q5VV17 481 aaPredicted RBP7.46□□□□□ -1.22
VPS13C-206ENST00000558338 WSCD1Q658N2 575 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 PACS1Q6VY07 963 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 FAM35AQ86V20 835 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 LONP2Q86WA8 852 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 SCML4Q8N228 414 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 MPP5Q8N3R9 675 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 CCNYQ8ND76 341 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 STKLD1Q8NE28 680 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 ARMC2Q8NEN0 867 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 PPP1R14CQ8TAE6 165 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 SMARCD1Q96GM5 515 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 OXNAD1Q96HP4 312 aaPredicted RBP7.46□□□□□ -1.22
VPS13C-206ENST00000558338 SENP8Q96LD8 212 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 PPP1R2P1Q96PQ5 205 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 EPAS1Q99814 870 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 CPNE1Q99829 537 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 BTBD10Q9BSF8 475 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 LRRC40Q9H9A6 602 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 RNPEPL1Q9HAU8 725 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 GOLGA2P5Q9HBQ8 144 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 SMYD2Q9NRG4 433 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.46□□□□□ -1.22
VPS13C-206ENST00000558338 THAP1Q9NVV9 213 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 DDX43Q9NXZ2 648 aaKnown RBP7.46□□□□□ -1.22
VPS13C-206ENST00000558338 KLHL8Q9P2G9 620 aaPredicted RBP7.46□□□□□ -1.22
VPS13C-206ENST00000558338 TRHDEQ9UKU6 1024 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 TRIM33Q9UPN9 1127 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 SORCS3Q9UPU3 1222 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 GIT1Q9Y2X7 761 aa7.46□□□□□ -1.22
VPS13C-206ENST00000558338 MRPL42Q9Y6G3 142 aaKnown RBP7.46□□□□□ -1.22
VPS13C-206ENST00000558338 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms