RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 PPP6R3Q5H9R7 873 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-232ENST00000557487 LPCAT4Q643R3 524 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 CASC4Q6P4E1 433 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 LRRC71Q8N4P6 559 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 CNDP1Q96KN2 507 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 ZFRQ96KR1 1074 aaKnown RBP16.71■□□□□ 0.27
SHMT2-232ENST00000557487 C11orf84Q9BUA3 381 aaPredicted RBP16.71■□□□□ 0.27
SHMT2-232ENST00000557487 RAB6CQ9H0N0 254 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 PNPOQ9NVS9 261 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 PTTG2Q9NZH5 202 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 ATXN10Q9UBB4 475 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 HESX1Q9UBX0 185 aa16.71■□□□□ 0.27
SHMT2-232ENST00000557487 BTBD19C9JJ37 291 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 H3BNX3 289 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 GPR25O00155 361 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 B4GALT5O43286 388 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 GRAP2O75791 330 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 CELF2O95319 508 aaKnown RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 MPOP05164 745 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 POLBP06746 335 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 NCF2P19878 526 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 RPL5P46777 297 aaKnown RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 SERPINB8P50452 374 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 KLF10Q13118 480 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 PRKG1Q13976 671 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 LRRC23Q53EV4 343 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 HSP90AA5PQ58FG0 334 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 SH2D4BQ5SQS7 431 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 RARS2Q5T160 578 aaKnown RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 IFNLR1Q8IU57 520 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 PQLC1Q8N2U9 271 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 KHSRPQ92945 711 aaKnown RBP eCLIP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 CDCA5Q96FF9 252 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 PIWIL1Q96J94 861 aaKnown RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 WRNIP1Q96S55 665 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 EPAS1Q99814 870 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 PDZD7Q9H5P4 517 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 HBP1O60381 514 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 PDE5AO76074 875 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 PRKCGP05129 697 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 APOA4P06727 396 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 VAV1P15498 845 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 SPRP35270 261 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 ALDH1A3P47895 512 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 FOLH1Q04609 750 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 SLC10A2Q12908 348 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 DLG1Q12959 904 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 NBPF12Q5TAG4 269 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 DLK2Q6UY11 383 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 SLC26A9Q7LBE3 791 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 SLC35F5Q8WV83 523 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 DLG3Q92796 817 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 EZH1Q92800 747 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 CLMNQ96JQ2 1002 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 CSPG4P5Q96PW8 444 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 GPR20Q99678 358 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 DHX35Q9H5Z1 703 aaKnown RBP16.7■□□□□ 0.26
SHMT2-232ENST00000557487 AP4E1Q9UPM8 1137 aa16.7■□□□□ 0.26
SHMT2-232ENST00000557487 C15orf38-AP3S2A0A0A6YYH1 394 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 STRNO43815 780 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 TOP3BO95985 862 aaKnown RBP16.69■□□□□ 0.26
SHMT2-232ENST00000557487 SNAPC2Q13487 334 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 PMF1Q6P1K2 205 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 FRMD7Q6ZUT3 714 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 DPH6Q7L8W6 267 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 ARPINQ7Z6K5 226 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 SPATA24Q86W54 205 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 HPS6Q86YV9 775 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 RIOX2Q8IUF8 465 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 TMEM192Q8IY95 271 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 DNAJC5GQ8N7S2 189 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 ARNTL2Q8WYA1 636 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 MMP19Q99542 508 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 CYP4F11Q9HBI6 524 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 DTLQ9NZJ0 730 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 TMEM216Q9P0N5 145 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 POLR2AP24928 1970 aaKnown RBP16.69■□□□□ 0.26
SHMT2-232ENST00000557487 TRPM7Q96QT4 1865 aa16.69■□□□□ 0.26
SHMT2-232ENST00000557487 NOP56O00567 594 aaKnown RBP16.68■□□□□ 0.26
SHMT2-232ENST00000557487 HSPA4LO95757 839 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 GLDCP23378 1020 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 ARL4AP40617 200 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 HADHAP40939 763 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 GRIA1P42261 906 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 GLUD2P49448 558 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 HERC3Q15034 1050 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 ADRM1Q16186 407 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 GRAMD1BQ3KR37 738 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 TMEM259Q4ZIN3 620 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 SH3D19Q5HYK7 790 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 NCBP2-AS2Q69YL0 99 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 STRADAQ7RTN6 431 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 RSPH3Q86UC2 560 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 LCA5Q86VQ0 697 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 AHI1Q8N157 1196 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 COLGALT1Q8NBJ5 622 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 ADCY4Q8NFM4 1077 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 B4GALNT2Q8NHY0 566 aa16.68■□□□□ 0.26
SHMT2-232ENST00000557487 RP9Q8TA86 221 aaKnown RBP16.68■□□□□ 0.26
SHMT2-232ENST00000557487 FAM81AQ8TBF8 368 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms