RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 MMP19Q99542 508 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 CYP4F11Q9HBI6 524 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 DTLQ9NZJ0 730 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 TMEM216Q9P0N5 145 aa16.69■□□□□ 0.26
SHMT2-231ENST00000557433 NOP56O00567 594 aaKnown RBP16.68■□□□□ 0.26
SHMT2-231ENST00000557433 HSPA4LO95757 839 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 GLDCP23378 1020 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 ARL4AP40617 200 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 HADHAP40939 763 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 GRIA1P42261 906 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 GLUD2P49448 558 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 HERC3Q15034 1050 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 ADRM1Q16186 407 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 GRAMD1BQ3KR37 738 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 TMEM259Q4ZIN3 620 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 SH3D19Q5HYK7 790 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 NCBP2-AS2Q69YL0 99 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 STRADAQ7RTN6 431 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 RSPH3Q86UC2 560 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 LCA5Q86VQ0 697 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 AHI1Q8N157 1196 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 COLGALT1Q8NBJ5 622 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 ADCY4Q8NFM4 1077 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 B4GALNT2Q8NHY0 566 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 RP9Q8TA86 221 aaKnown RBP16.68■□□□□ 0.26
SHMT2-231ENST00000557433 FAM81AQ8TBF8 368 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 RDH11Q8TC12 318 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 JDP2Q8WYK2 163 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 CCDC124Q96CT7 223 aaKnown RBP16.68■□□□□ 0.26
SHMT2-231ENST00000557433 CERS2Q96G23 380 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 TRIM56Q9BRZ2 755 aaKnown RBP16.68■□□□□ 0.26
SHMT2-231ENST00000557433 MRPS26Q9BYN8 205 aaKnown RBP16.68■□□□□ 0.26
SHMT2-231ENST00000557433 COG4Q9H9E3 785 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 GGA3Q9NZ52 723 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 RGSL1A5PLK6 1076 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 PAPSS1O43252 624 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-231ENST00000557433 DCXO43602 365 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 ADORA2AP29274 412 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 RGS7P49802 495 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 ERFP50548 548 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 LRRC36Q1X8D7 754 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 NOL9Q5SY16 702 aaKnown RBP16.68■□□□□ 0.26
SHMT2-231ENST00000557433 ARHGAP17Q68EM7 881 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 DDI1Q8WTU0 396 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 PRICKLE1Q96MT3 831 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-231ENST00000557433 SMARCAD1Q9H4L7 1026 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 SUDS3Q9H7L9 328 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-231ENST00000557433 SNX15Q9NRS6 342 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 MTMR10Q9NXD2 777 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 DPP3Q9NY33 737 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 IGSF9Q9P2J2 1179 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 PADI4Q9UM07 663 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 INPP5FQ9Y2H2 1132 aa16.68■□□□□ 0.26
SHMT2-231ENST00000557433 SLCO1B7G3V0H7 640 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 TRIM13O60858 407 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 MAP3K6O95382 1288 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 MGAT1P26572 445 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 LIMK2P53671 638 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 PDK1Q15118 436 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 SLC10A6Q3KNW5 377 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 CELF3Q5SZQ8 465 aaKnown RBP16.67■□□□□ 0.26
SHMT2-231ENST00000557433 EFCAB12Q6NXP0 572 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 LBX2Q6XYB7 198 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 TMC7Q7Z402 723 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 UNC93AQ86WB7 457 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 CPSF7Q8N684 471 aaKnown RBP16.67■□□□□ 0.26
SHMT2-231ENST00000557433 KYQ8NBH2 561 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 LZICQ8WZA0 190 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 DCUN1D1Q96GG9 259 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 HIC2Q96JB3 615 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 LRGUKQ96M69 825 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 KCTD15Q96SI1 283 aaPredicted RBP16.67■□□□□ 0.26
SHMT2-231ENST00000557433 RBBP8Q99708 897 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 DNAI2Q9GZS0 605 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 ZNF696Q9H7X3 374 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 LRRC40Q9H9A6 602 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 TCF7L2Q9NQB0 619 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 MRGBPQ9NV56 204 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 HACL1Q9UJ83 578 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 SCAF8Q9UPN6 1271 aaKnown RBP16.67■□□□□ 0.26
SHMT2-231ENST00000557433 USP3Q9Y6I4 520 aa16.67■□□□□ 0.26
SHMT2-231ENST00000557433 SOWAHBA6NEL2 793 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 PIK3R2O00459 728 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 TXNDC9O14530 226 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 TNFAIP8O95379 198 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 DNAJB1P25685 340 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 GRIA2P42262 883 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 ACADSBP45954 432 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 RPL34P49207 117 aaKnown RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 PABPC1LQ4VXU2 614 aaKnown RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 PPP1R26Q5T8A7 1209 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 TTC30AQ86WT1 665 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 PHTF2Q8N3S3 785 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 RNF217Q8TC41 542 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 ILKAPQ9H0C8 392 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 THEGQ9P2T0 379 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 VTI1BQ9UEU0 232 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 RGS17Q9UGC6 210 aaPredicted RBP16.66■□□□□ 0.26
SHMT2-231ENST00000557433 DERAQ9Y315 318 aa16.66■□□□□ 0.26
SHMT2-231ENST00000557433 GOLGA8QA0A0J9YX86 632 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms