RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 GABRG3Q99928 467 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 ADAM33Q9BZ11 813 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 SIK2Q9H0K1 926 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 EPC1Q9H2F5 836 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 ZDHHC4Q9NPG8 344 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 PARVAQ9NVD7 372 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 TAS2R14Q9NYV8 317 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 HCN2Q9UL51 889 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 RAB23Q9ULC3 237 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 VANGL2Q9ULK5 521 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 PLA2G4CQ9UP65 541 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 STON1Q9Y6Q2 735 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 SPAG17Q6Q759 2223 aa12.9□□□□□ -0.34
SLIRP-209ENST00000557342 CEP192Q8TEP8 1941 aa12.9□□□□□ -0.35
SLIRP-209ENST00000557342 MUC22E2RYF6 1773 aaPredicted RBP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 TCRBV21S2A2A0A5A6 115 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 DDX3XO00571 662 aaKnown RBP eCLIP12.89□□□□□ -0.353e-31■■■■■ 27.5
SLIRP-209ENST00000557342 MYBL1P10243 752 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 RRM1P23921 792 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 CD70P32970 193 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 WASP42768 502 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 PXNP49023 591 aaPredicted RBP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 ATXN1P54253 815 aaKnown RBP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 LMAN2Q12907 356 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 ENPP2Q13822 863 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 BYSLQ13895 437 aaKnown RBP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 SIM2Q14190 667 aaPredicted RBP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 ZNF234Q14588 700 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 STARD3Q14849 445 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 TSR1Q2NL82 804 aaKnown RBP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 C15orf59Q2T9L4 293 aaPredicted RBP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 C5orf22Q49AR2 442 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 PPP1R15BQ5SWA1 713 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 TMEM215Q68D42 235 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 MBLAC2Q68D91 279 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 ANO7Q6IWH7 933 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 SARM1Q6SZW1 724 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 CEP68Q76N32 757 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 ADIPOR2Q86V24 386 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 ALYREFQ86V81 257 aaKnown RBP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 C11orf74Q86VG3 221 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 VSTM4Q8IW00 320 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 DRC7Q8IY82 874 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 OLIG1Q8TAK6 271 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 WFDC5Q8TCV5 224 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 FAM172AQ8WUF8 416 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 GAB3Q8WWW8 586 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 CENPIQ92674 756 aaPredicted RBP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 MCEEQ96PE7 176 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 ACOX2Q99424 681 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 CACNA2D2Q9NY47 1150 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 BCCIPQ9P287 314 aaKnown RBP eCLIP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 RALGAPA1Q6GYQ0 2036 aa12.89□□□□□ -0.35
SLIRP-209ENST00000557342 NYNRINQ9P2P1 1898 aaKnown RBP12.89□□□□□ -0.35
SLIRP-209ENST00000557342 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 HRO43593 1189 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 SYNCRIPO60506 623 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 CLDN11O75508 207 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 RPP40O75818 363 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 GJB6O95452 261 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 ASLP04424 464 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 DLDP09622 509 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 HOXD11P31277 338 aaPredicted RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 HNRNPH3P31942 346 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 IL12RB1P42701 662 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 ZNF143P52747 638 aaPredicted RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 CDH4P55283 916 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 ZNF177Q13360 481 aaPredicted RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 FNDC3BQ53EP0 1204 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 USP39Q53GS9 565 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 PLEKHA7Q6IQ23 1121 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 SERPINA13PQ6UXR4 307 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 PRR23BQ6ZRT6 265 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 ASCL5Q7RTU5 278 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 FAM131BQ86XD5 332 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 CCAR2Q8N163 923 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 PGBD3Q8N328 593 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 SUMF1Q8NBK3 374 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 MDGA1Q8NFP4 955 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 OR8K1Q8NGG5 319 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 IGSF8Q969P0 613 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 TTC17Q96AE7 1141 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 LMLNQ96KR4 655 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 CNPY3Q9BT09 278 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 TRIM5Q9C035 493 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 ISCUQ9H1K1 167 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 MRPL47Q9HD33 250 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 ANLNQ9NQW6 1124 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 ZNHIT6Q9NWK9 470 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 CNOT8Q9UFF9 292 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 ADAMTS1Q9UHI8 967 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 SMG5Q9UPR3 1016 aaKnown RBP12.88□□□□□ -0.35
SLIRP-209ENST00000557342 SCINQ9Y6U3 715 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 THADAQ6YHU6 1953 aa12.88□□□□□ -0.35
SLIRP-209ENST00000557342 A0A1W2PQF6 199 aa12.87□□□□□ -0.35
SLIRP-209ENST00000557342 E9PAM4 449 aa12.87□□□□□ -0.35
SLIRP-209ENST00000557342 HOXC13P31276 330 aa12.87□□□□□ -0.35
SLIRP-209ENST00000557342 ADRA1BP35368 520 aa12.87□□□□□ -0.35
SLIRP-209ENST00000557342 PLK1P53350 603 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms